Adopt reusable CI standard + PHPUnit suite (#8)
* feat(ci): adopt estate CI + add PHPUnit suite from scratch (v1.2.0) - Add PHPUnit 9.6 test suite (WP stubs, tests: stubs) — 40 tests across 4 files: MathTest: 25 tests covering all PRC_Math public methods and calculate() orchestrator with real peptide scenarios (BPC-157/TB-500/Semaglutide/MK-677/ Ipamorelin) plus edge cases (zero water, negative inputs, floor rounding, rounding precision, mcg↔mg conversion). DefaultPresetsTest: 11 tests — all 8 expected slugs, required keys per preset (dataProvider), dose_unit validity, min<max range, source field, spot-checks. RestControllerTest: 7 tests — calculate() 200 + correct values (mcg+mg), get_presets() 200, get_preset() 200 for known slug / WP_Error for unknown. PresetProviderTest: 4 tests — fallback to defaults sans PR Core, slug key present, cache invalidation, idempotent invalidation. - Add phpunit.xml.dist + tests/bootstrap.php (WP function/class stubs). - Add composer test script: vendor/bin/phpunit --configuration phpunit.xml.dist. - Add phpunit/phpunit ^9.6 + yoast/phpunit-polyfills ^2.0 to require-dev. - Replace standalone ci.yml with thin caller to estate reusable workflow: uses: peptiderepo/peptide-e2e/.github/workflows/ci.yml@main with: tests: stubs, has_js: true permissions: contents: write (required for phpcbf commit-back) workflow_call (required for deploy.yml gate). - deploy.yml unchanged — already gates on ./ci.yml + uses shared deploy-app.yml. - Version bump 1.1.0 → 1.2.0. Agent-Session: claude/adopt-ci-20260616 * style: auto-fix PHPCS violations via phpcbf * fix(ci): resolve latent PHPCS + JS lint failures Latent debt surfaced by the reusable PHPCS job (previously continue-on-error). PHPCS fixes (all pre-existing, not introduced by this PR): - Add @package PeptideReconstitutionCalculator to file docblocks in all 12 PHP files (previously missing; phpcbf cannot insert missing docblock tags). - Replace two short-ternary ?: operators in class-prc-preset-provider.php with full ternary (Universal.Operators.DisallowShortTernary.Found; lines 136+152). JS lint fix: - Add package.json + package-lock.json (no deps; lint script = node --check) so the reusable lint-js job's npm ci / cache: npm steps succeed. The calculator ships vanilla JS with no build toolchain — package.json is the minimal stub the reusable workflow requires for has_js: true. Agent-Session: claude/adopt-ci-20260616 * style: auto-fix PHPCS violations via phpcbf * fix(phpcs): suppress intentional warnings with phpcs:ignore annotations uninstall.php: direct wpdb->query() intentional in uninstall (no caching available); add phpcs:ignore DirectDatabaseQuery.DirectQuery and NoCaching. class-prc-rest-controller.php get_presets(): request param required by WP REST API callback contract; add phpcs:ignore UnusedFunctionParameter. Agent-Session: claude/adopt-ci-20260616 --------- Co-authored-by: peptiderepo <bot@peptiderepo.com> Co-authored-by: peptiderepo <peptiderepo@users.noreply.github.com>
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peptiderepo
@@ -12,6 +12,7 @@
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* @see class-prc-default-presets.php — Hardcoded fallback presets.
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* @see PR_Core_Peptide_Repository (PR Core) — Peptide list source.
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* @see PR_Core_Dosing_Repository (PR Core) — Dosing data source.
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* @package PeptideReconstitutionCalculator
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*/
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declare(strict_types=1);
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@@ -89,19 +90,19 @@ class PRC_Preset_Provider {
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// could fail to autoload (e.g. fatal error in PR Core bootstrap).
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// Fall back to empty array so the caller merges in defaults gracefully.
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if ( ! class_exists( 'PR_Core_Peptide_Repository' ) || ! class_exists( 'PR_Core_Dosing_Repository' ) ) {
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return [];
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return array();
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}
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$peptide_repo = new PR_Core_Peptide_Repository();
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$dosing_repo = new PR_Core_Dosing_Repository();
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$peptides = $peptide_repo->find_all( [ 'posts_per_page' => 100 ] );
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$presets = [];
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$peptides = $peptide_repo->find_all( array( 'posts_per_page' => 100 ) );
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$presets = array();
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foreach ( $peptides as $peptide ) {
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$rows = $dosing_repo->find_by_peptide(
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$peptide->id,
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[ 'route' => 'subcutaneous' ]
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array( 'route' => 'subcutaneous' )
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);
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if ( empty( $rows ) ) {
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@@ -133,7 +134,7 @@ class PRC_Preset_Provider {
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// Extract dose range across all rows.
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$dose_mins = array_filter( array_map( fn( $r ) => $r->dose_min, $rows ) );
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$dose_maxs = array_filter( array_map( fn( $r ) => $r->dose_max, $rows ) );
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$dose_unit = $rows[0]->dose_unit ?: 'mcg';
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$dose_unit = ! empty( $rows[0]->dose_unit ) ? $rows[0]->dose_unit : 'mcg';
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// Derive typical vial sizes from dose range.
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// Why: Most peptides are sold in standard vial sizes (2mg, 5mg, 10mg, 15mg, 30mg).
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@@ -141,26 +142,26 @@ class PRC_Preset_Provider {
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$display_name = '';
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if ( method_exists( $peptide, 'to_array' ) ) {
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$arr = $peptide->to_array();
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$arr = $peptide->to_array();
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$display_name = $arr['display_name'] ?? $peptide->title ?? '';
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} else {
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$display_name = $peptide->title ?? '';
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}
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return [
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'slug' => $peptide->slug,
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'name' => $display_name ?: $peptide->title,
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'vial_sizes_mg' => $vial_sizes,
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'default_vial_mg' => $vial_sizes[0] ?? 5,
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'recommended_water_ml' => $this->recommend_water_ml( $vial_sizes[0] ?? 5 ),
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'dose_range_min' => ! empty( $dose_mins ) ? min( $dose_mins ) : null,
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'dose_range_max' => ! empty( $dose_maxs ) ? max( $dose_maxs ) : null,
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'dose_unit' => $dose_unit,
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'typical_frequency' => $this->most_common_frequency( $rows ),
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'evidence_strength' => $peptide->evidence_strength ?? 'preclinical',
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'dosing_row_count' => count( $rows ),
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'source' => 'pr_core',
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];
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return array(
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'slug' => $peptide->slug,
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'name' => ! empty( $display_name ) ? $display_name : $peptide->title,
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'vial_sizes_mg' => $vial_sizes,
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'default_vial_mg' => $vial_sizes[0] ?? 5,
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'recommended_water_ml' => $this->recommend_water_ml( $vial_sizes[0] ?? 5 ),
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'dose_range_min' => ! empty( $dose_mins ) ? min( $dose_mins ) : null,
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'dose_range_max' => ! empty( $dose_maxs ) ? max( $dose_maxs ) : null,
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'dose_unit' => $dose_unit,
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'typical_frequency' => $this->most_common_frequency( $rows ),
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'evidence_strength' => $peptide->evidence_strength ?? 'preclinical',
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'dosing_row_count' => count( $rows ),
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'source' => 'pr_core',
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);
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}
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/**
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@@ -176,10 +177,10 @@ class PRC_Preset_Provider {
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* @return float[] Standard vial sizes in mg.
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*/
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private function infer_vial_sizes( array $dose_mins, array $dose_maxs, string $dose_unit ): array {
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$standard_sizes = [ 2, 5, 10, 15, 30 ];
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$standard_sizes = array( 2, 5, 10, 15, 30 );
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if ( empty( $dose_mins ) && empty( $dose_maxs ) ) {
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return [ 5, 10 ];
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return array( 5, 10 );
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}
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// Convert everything to mg for comparison.
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@@ -187,12 +188,12 @@ class PRC_Preset_Provider {
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$all_doses = array_merge( $dose_mins, $dose_maxs );
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foreach ( $all_doses as $dose ) {
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$mg = ( 'mcg' === $dose_unit ) ? $dose / 1000 : $dose;
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$mg = ( 'mcg' === $dose_unit ) ? $dose / 1000 : $dose;
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$max_dose_mg = max( $max_dose_mg, $mg );
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}
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// Pick vials that hold at least 10 doses at the max dose level.
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$viable = [];
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$viable = array();
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foreach ( $standard_sizes as $size ) {
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if ( $max_dose_mg > 0 && ( $size / $max_dose_mg ) >= 5 ) {
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$viable[] = $size;
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@@ -200,7 +201,7 @@ class PRC_Preset_Provider {
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}
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// Fallback: return two middle sizes if heuristic found nothing.
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return ! empty( $viable ) ? array_slice( $viable, 0, 3 ) : [ 5, 10 ];
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return ! empty( $viable ) ? array_slice( $viable, 0, 3 ) : array( 5, 10 );
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}
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/**
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