ci: adopt estate CI standard + convert 7 hand-rolled tests to PHPUnit (v0.7.0)
- Replace hand-rolled ci.yml jobs with thin caller to reusable estate workflow
(peptiderepo/peptide-e2e/.github/workflows/ci.yml@main); tests: stubs; has_js: false.
workflow_call + permissions: contents: write added per estate standard so deploy.yml
can gate on it and phpcbf auto-commit step has required token scope.
- Convert 7 hand-rolled test-*.php scripts to PHPUnit TestCase classes:
PeptideCptTest <- test-peptide-cpt.php
VerificationScannerTest <- test-verification-scanner.php
VerificationSettingsTest <- test-verification-settings.php
Migration0004Test <- test-migration-0004.php
JsonldTest <- test-jsonld.php
JsonldWebpageTest <- test-jsonld-webpage.php
JsonldPeptidePieceTest <- test-jsonld-peptide-piece.php
All assertions preserved; old scripts remain in tests/unit/ but CI no longer
runs them (PHPUnit discovery matches *Test.php only).
- Rewrite tests/bootstrap.php: full WP stub library for PHPUnit (WP_Post, WP_Error,
all option/cron/CPT/taxonomy/permalink stubs); registers PR_Core_Autoloader.
- Add phpunit.xml.dist (bootstrap, unit suite, includes/ coverage).
- Add phpunit/phpunit ^9.6 + yoast/phpunit-polyfills ^2.0 to require-dev.
- Add composer test script (vendor/bin/phpunit --configuration phpunit.xml.dist).
- deploy.yml: add permissions: contents: write.
- Version bump 0.6.2 -> 0.7.0.
Agent-Session: claude-adopt-ci-20260616
This commit is contained in:
peptiderepo
297
tests/unit/JsonldTest.php
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297
tests/unit/JsonldTest.php
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<?php
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/**
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* Unit tests for JSON-LD v0.6.0 emission.
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*
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* Ported from tests/unit/test-jsonld.php.
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*
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* Coverage:
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* - Drug node: @id, @type, fields present/absent based on meta.
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* - FAQPage: present/absent, @id, mainEntity count.
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* - MedicalWebPage retype on/off peptide singular.
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* - No duplicate WebPage/BreadcrumbList nodes from our builders.
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* - PR_Core_Schema_Sanitizers::sanitize_faq_items() validation.
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*
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* @package PeptideRepoCore\Tests
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*/
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use PHPUnit\Framework\TestCase;
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/**
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* Tests for JSON-LD Drug/FAQ/Webpage emission.
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*/
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class JsonldTest extends TestCase {
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protected function setUp(): void {
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$GLOBALS['pr_test_postmeta'] = [];
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$GLOBALS['pr_test_is_singular'] = false;
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$GLOBALS['pr_test_singular_type'] = '';
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$GLOBALS['pr_test_the_id'] = 0;
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$GLOBALS['pr_core_test_state'] = [
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'existing_post_types' => [],
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'existing_taxonomies' => [],
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'registered_post_types' => [],
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'registered_taxonomies' => [],
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'registered_meta' => [],
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'added_actions' => [],
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'added_filters' => [],
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];
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require_once PR_CORE_PLUGIN_DIR . 'includes/cpt/class-pr-core-schema-sanitizers.php';
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require_once PR_CORE_PLUGIN_DIR . 'includes/cpt/class-pr-core-peptide-cpt.php';
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require_once PR_CORE_PLUGIN_DIR . 'includes/dto/class-pr-core-peptide-dto.php';
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require_once PR_CORE_PLUGIN_DIR . 'includes/frontend/class-pr-core-jsonld-drug.php';
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require_once PR_CORE_PLUGIN_DIR . 'includes/frontend/class-pr-core-jsonld-faq.php';
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require_once PR_CORE_PLUGIN_DIR . 'includes/frontend/class-pr-core-jsonld-webpage.php';
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require_once PR_CORE_PLUGIN_DIR . 'includes/frontend/class-pr-core-jsonld.php';
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}
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// ── Helper ────────────────────────────────────────────────────────
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/**
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* @param array<string, mixed> $overrides
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*/
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private function make_peptide_dto( array $overrides = [] ): PR_Core_Peptide_DTO {
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return new PR_Core_Peptide_DTO( array_merge( [
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'id' => 1,
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'title' => 'BPC-157',
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'slug' => 'bpc-157',
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'content' => '',
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'excerpt' => 'A synthetic peptide.',
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'status' => 'publish',
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'display_name' => 'BPC-157',
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'aliases' => [],
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'molecular_formula' => '',
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'molecular_weight' => 0.0,
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'cas_number' => '',
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'drugbank_id' => '',
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'chembl_id' => '',
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'evidence_strength' => 'preclinical',
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'editorial_review_status' => 'published',
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'last_editorial_review_at' => '',
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'medical_editor_id' => 0,
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'categories' => [],
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'families' => [],
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], $overrides ) );
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}
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// ── Drug @id ─────────────────────────────────────────────────────
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public function test_drug_node_has_id(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertArrayHasKey( '@id', $drug_node );
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}
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public function test_drug_node_id_format(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertSame( 'https://peptiderepo.com/peptides/bpc-157/#drug', $drug_node['@id'] );
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}
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// ── Drug @type ────────────────────────────────────────────────────
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public function test_drug_type_is_array(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertIsArray( $drug_node['@type'] );
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}
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public function test_drug_type_includes_drug(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertContains( 'Drug', $drug_node['@type'] );
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}
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public function test_drug_type_includes_molecular_entity(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertContains( 'MolecularEntity', $drug_node['@type'] );
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}
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// ── Drug fields present when meta set ────────────────────────────
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public function test_molecular_formula_present_when_meta_set(): void {
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$GLOBALS['pr_test_postmeta'][1] = [ '_pr_molecular_formula' => 'C62H98N16O22', '_pr_molecular_weight' => '1419.5', '_pr_aliases' => '[]' ];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertArrayHasKey( 'molecularFormula', $drug_node );
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$this->assertSame( 'C62H98N16O22', $drug_node['molecularFormula'] );
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}
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public function test_molecular_weight_present_when_meta_set(): void {
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$GLOBALS['pr_test_postmeta'][1] = [ '_pr_molecular_formula' => '', '_pr_molecular_weight' => '1419.5', '_pr_aliases' => '[]' ];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertArrayHasKey( 'molecularWeight', $drug_node );
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$this->assertSame( 'QuantitativeValue', $drug_node['molecularWeight']['@type'] );
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$this->assertSame( 1419.5, $drug_node['molecularWeight']['value'] );
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$this->assertSame( 'g/mol', $drug_node['molecularWeight']['unitText'] );
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}
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public function test_alternate_name_present_when_aliases_set(): void {
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$GLOBALS['pr_test_postmeta'][1] = [ '_pr_molecular_formula' => '', '_pr_molecular_weight' => '0', '_pr_aliases' => '["Body Protection Compound-157","PL 14736"]' ];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertArrayHasKey( 'alternateName', $drug_node );
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$this->assertCount( 2, $drug_node['alternateName'] );
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}
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// ── Drug fields omitted when meta empty ──────────────────────────
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public function test_molecular_formula_omitted_when_meta_empty(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertArrayNotHasKey( 'molecularFormula', $drug_node );
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}
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public function test_molecular_weight_omitted_when_meta_empty(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertArrayNotHasKey( 'molecularWeight', $drug_node );
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}
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public function test_alternate_name_omitted_when_aliases_empty(): void {
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$GLOBALS['pr_test_postmeta'][1] = [ '_pr_aliases' => '[]' ];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$this->assertArrayNotHasKey( 'alternateName', $drug_node );
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}
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// ── FAQPage emission ──────────────────────────────────────────────
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public function test_faq_piece_not_null_when_items_present(): void {
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$GLOBALS['pr_test_postmeta'][1] = [
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'_pr_faq_items' => wp_json_encode( [
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[ 'question' => 'What is BPC-157?', 'answer' => 'A synthetic peptide.' ],
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[ 'question' => 'Is it legal?', 'answer' => 'Research use only.' ],
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] ),
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];
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$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
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$this->assertNotNull( $faq_piece );
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}
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public function test_faq_piece_type_is_faq_page(): void {
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$GLOBALS['pr_test_postmeta'][1] = [
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'_pr_faq_items' => wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ),
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];
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$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
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$this->assertSame( 'FAQPage', $faq_piece['@type'] );
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}
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public function test_faq_piece_id_format(): void {
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$permalink = 'https://peptiderepo.com/peptides/bpc-157/';
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$GLOBALS['pr_test_postmeta'][1] = [
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'_pr_faq_items' => wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ),
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];
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$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, $permalink );
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$this->assertSame( $permalink . '#faq', $faq_piece['@id'] );
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}
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public function test_faq_piece_has_main_entity(): void {
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$GLOBALS['pr_test_postmeta'][1] = [
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'_pr_faq_items' => wp_json_encode( [
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[ 'question' => 'What is BPC-157?', 'answer' => 'A synthetic peptide.' ],
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[ 'question' => 'Is it legal?', 'answer' => 'Research use only.' ],
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] ),
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];
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$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
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$this->assertArrayHasKey( 'mainEntity', $faq_piece );
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$this->assertCount( 2, $faq_piece['mainEntity'] );
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}
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public function test_faq_main_entity_question_type(): void {
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$GLOBALS['pr_test_postmeta'][1] = [
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'_pr_faq_items' => wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ),
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];
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$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
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$this->assertSame( 'Question', $faq_piece['mainEntity'][0]['@type'] );
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}
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public function test_faq_main_entity_has_accepted_answer(): void {
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$GLOBALS['pr_test_postmeta'][1] = [
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'_pr_faq_items' => wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ),
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];
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$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
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$this->assertArrayHasKey( 'acceptedAnswer', $faq_piece['mainEntity'][0] );
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}
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public function test_faq_piece_null_when_items_json_empty(): void {
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$GLOBALS['pr_test_postmeta'][1] = [ '_pr_faq_items' => '[]' ];
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$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
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$this->assertNull( $faq_piece );
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}
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public function test_faq_piece_null_when_items_absent(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
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$this->assertNull( $faq_piece );
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}
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// ── MedicalWebPage retype ─────────────────────────────────────────
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public function test_retype_returns_medical_webpage_on_peptide_singular(): void {
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$GLOBALS['pr_test_is_singular'] = true;
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$GLOBALS['pr_test_singular_type'] = 'peptide';
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$result = ( new PR_Core_Jsonld_Webpage() )->retype_to_medical_webpage( 'WebPage' );
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$this->assertSame( 'MedicalWebPage', $result );
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}
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public function test_retype_passes_through_on_non_peptide_page(): void {
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$GLOBALS['pr_test_is_singular'] = false;
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$GLOBALS['pr_test_singular_type'] = '';
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$result = ( new PR_Core_Jsonld_Webpage() )->retype_to_medical_webpage( 'WebPage' );
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$this->assertSame( 'WebPage', $result );
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}
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// ── No duplicate nodes from our builders ──────────────────────────
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public function test_builders_do_not_emit_webpage_type(): void {
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$GLOBALS['pr_test_postmeta'][1] = [
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'_pr_molecular_formula' => 'C62H98N16O22',
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'_pr_molecular_weight' => '1419.5',
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'_pr_aliases' => '["Body Protection Compound-157","PL 14736"]',
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];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$types = is_array( $drug_node['@type'] ) ? $drug_node['@type'] : [ $drug_node['@type'] ];
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$this->assertNotContains( 'WebPage', $types );
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$this->assertNotContains( 'MedicalWebPage', $types );
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}
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public function test_builders_do_not_emit_breadcrumb_type(): void {
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$GLOBALS['pr_test_postmeta'][1] = [];
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$peptide = $this->make_peptide_dto();
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$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
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$types = is_array( $drug_node['@type'] ) ? $drug_node['@type'] : [ $drug_node['@type'] ];
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$this->assertNotContains( 'BreadcrumbList', $types );
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}
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// ── sanitize_faq_items() ──────────────────────────────────────────
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public function test_sanitize_faq_items_valid_input(): void {
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$result = PR_Core_Schema_Sanitizers::sanitize_faq_items( wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ) );
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$decoded = json_decode( $result, true );
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$this->assertIsArray( $decoded );
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$this->assertCount( 1, $decoded );
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}
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public function test_sanitize_faq_items_empty_json_array(): void {
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$this->assertSame( '[]', PR_Core_Schema_Sanitizers::sanitize_faq_items( '[]' ) );
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}
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public function test_sanitize_faq_items_malformed_json(): void {
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$this->assertSame( '[]', PR_Core_Schema_Sanitizers::sanitize_faq_items( 'not-json' ) );
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}
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public function test_sanitize_faq_items_drops_item_missing_answer(): void {
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$result = PR_Core_Schema_Sanitizers::sanitize_faq_items( wp_json_encode( [ [ 'question' => 'No answer here?' ] ] ) );
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$decoded = json_decode( $result, true );
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$this->assertCount( 0, $decoded );
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}
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}
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