feat: initial peptide-repo-core plugin (v0.1.0) — canonical schema sprint
Implements ADR-0002: canonical peptide schema as shared data layer for the peptiderepo.com ecosystem. All Tier 1 tools (Reconstitution Calculator, Dosage Reference, Legal Status Tracker, PSA enhancements) build on this. Includes: - pr_peptide CPT with REST, taxonomies, 11 meta fields - 3 custom tables: pr_dosing_rows, pr_legal_cells, pr_ai_candidate_queue - Sequential migration runner with schema versioning - 4 typed DTOs and 4 repository classes (full CRUD) - REST API (pr-core/v1): 6 endpoints (read public, write auth-gated) - Admin UI: 3 meta boxes, custom columns, AI candidate queue page - Shared disclaimer component (shortcode + static API) - JSON-LD Drug schema emission on single peptide pages - Seed data fixture (3 peptides, 10 dosing rows, 5 legal cells) - Full teardown in uninstall.php - CI: PHP lint 8.0-8.2, PHPCS WordPress, 300-line check All 22 PHP files under 300 lines. Highest: peptide-cpt at 265. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
peptiderepo
260
includes/admin/class-pr-core-peptide-metaboxes.php
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260
includes/admin/class-pr-core-peptide-metaboxes.php
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<?php
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declare(strict_types=1);
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/**
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* Meta boxes for the peptide edit screen: scientific identifiers, dosing, and legal.
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*
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* What: Renders and saves three meta boxes on the pr_peptide edit screen.
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* Who calls it: PR_Core_Admin via add_meta_boxes and save_post hooks.
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* Dependencies: PR_Core_Dosing_Repository, PR_Core_Legal_Repository.
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*
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* @see admin/class-pr-core-admin.php — Registers these hooks.
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* @see cpt/class-pr-core-peptide-cpt.php — Meta field definitions.
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*/
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class PR_Core_Peptide_Metaboxes {
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/**
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* Register meta boxes on the peptide edit screen.
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*
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* @return void
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*/
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public function add_meta_boxes(): void {
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add_meta_box(
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'pr-core-identifiers',
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__( 'Scientific Identifiers', 'peptide-repo-core' ),
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[ $this, 'render_identifiers_box' ],
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PR_Core_Peptide_CPT::POST_TYPE,
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'normal',
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'high'
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);
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add_meta_box(
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'pr-core-dosing',
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__( 'Dosing Data', 'peptide-repo-core' ),
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[ $this, 'render_dosing_box' ],
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PR_Core_Peptide_CPT::POST_TYPE,
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'normal',
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'default'
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);
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add_meta_box(
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'pr-core-legal',
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__( 'Legal Status by Country', 'peptide-repo-core' ),
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[ $this, 'render_legal_box' ],
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PR_Core_Peptide_CPT::POST_TYPE,
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'normal',
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'default'
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);
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}
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/**
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* Render the Scientific Identifiers meta box.
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*
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* @param \WP_Post $post Current post.
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* @return void
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*/
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public function render_identifiers_box( \WP_Post $post ): void {
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wp_nonce_field( 'pr_core_save_meta', 'pr_core_meta_nonce' );
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$fields = [
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'display_name' => __( 'Display Name', 'peptide-repo-core' ),
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'aliases' => __( 'Aliases (JSON array)', 'peptide-repo-core' ),
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'molecular_formula' => __( 'Molecular Formula', 'peptide-repo-core' ),
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'molecular_weight' => __( 'Molecular Weight (Da)', 'peptide-repo-core' ),
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'cas_number' => __( 'CAS Number', 'peptide-repo-core' ),
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'drugbank_id' => __( 'DrugBank ID', 'peptide-repo-core' ),
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'chembl_id' => __( 'ChEMBL ID', 'peptide-repo-core' ),
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];
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echo '<table class="form-table pr-core-meta-table">';
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foreach ( $fields as $key => $label ) {
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$value = esc_attr( (string) get_post_meta( $post->ID, $key, true ) );
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printf(
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'<tr><th><label for="pr_core_%1$s">%2$s</label></th><td><input type="text" id="pr_core_%1$s" name="pr_core_%1$s" value="%3$s" class="regular-text" /></td></tr>',
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esc_attr( $key ),
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esc_html( $label ),
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$value
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);
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}
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// Evidence strength dropdown.
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$current_strength = get_post_meta( $post->ID, 'evidence_strength', true ) ?: 'preclinical';
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echo '<tr><th><label for="pr_core_evidence_strength">' . esc_html__( 'Evidence Strength', 'peptide-repo-core' ) . '</label></th><td><select id="pr_core_evidence_strength" name="pr_core_evidence_strength">';
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foreach ( PR_Core_Peptide_CPT::EVIDENCE_STRENGTHS as $strength ) {
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$label = apply_filters( 'pr_core_evidence_strength_label', $strength, $strength );
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printf(
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'<option value="%s"%s>%s</option>',
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esc_attr( $strength ),
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selected( $current_strength, $strength, false ),
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esc_html( $label )
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);
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}
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echo '</select></td></tr>';
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// Editorial review status.
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$current_review = get_post_meta( $post->ID, 'editorial_review_status', true ) ?: 'draft';
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echo '<tr><th><label for="pr_core_editorial_review_status">' . esc_html__( 'Editorial Status', 'peptide-repo-core' ) . '</label></th><td><select id="pr_core_editorial_review_status" name="pr_core_editorial_review_status">';
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foreach ( PR_Core_Peptide_CPT::REVIEW_STATUSES as $status ) {
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printf(
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'<option value="%s"%s>%s</option>',
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esc_attr( $status ),
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selected( $current_review, $status, false ),
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esc_html( ucfirst( str_replace( '-', ' ', $status ) ) )
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);
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}
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echo '</select></td></tr>';
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echo '</table>';
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}
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/**
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* Render the Dosing Data meta box (read-only summary with link to manage).
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*
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* @param \WP_Post $post Current post.
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* @return void
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*/
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public function render_dosing_box( \WP_Post $post ): void {
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if ( 'auto-draft' === $post->post_status ) {
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echo '<p>' . esc_html__( 'Save the peptide first, then add dosing data.', 'peptide-repo-core' ) . '</p>';
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return;
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}
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$repo = new PR_Core_Dosing_Repository();
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$rows = $repo->find_by_peptide( $post->ID );
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if ( empty( $rows ) ) {
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echo '<p>' . esc_html__( 'No dosing rows yet.', 'peptide-repo-core' ) . '</p>';
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} else {
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echo '<table class="widefat striped"><thead><tr>';
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echo '<th>' . esc_html__( 'Route', 'peptide-repo-core' ) . '</th>';
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echo '<th>' . esc_html__( 'Dose Range', 'peptide-repo-core' ) . '</th>';
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echo '<th>' . esc_html__( 'Population', 'peptide-repo-core' ) . '</th>';
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echo '<th>' . esc_html__( 'Evidence', 'peptide-repo-core' ) . '</th>';
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echo '<th>' . esc_html__( 'Source', 'peptide-repo-core' ) . '</th>';
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echo '</tr></thead><tbody>';
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foreach ( $rows as $row ) {
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$dose = $row->dose_min !== null ? number_format( $row->dose_min, 2 ) : '?';
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if ( $row->dose_max !== null && $row->dose_max !== $row->dose_min ) {
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$dose .= ' – ' . number_format( $row->dose_max, 2 );
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}
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$dose .= ' ' . esc_html( $row->dose_unit );
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$evidence_label = apply_filters( 'pr_core_evidence_strength_label', $row->evidence_strength, $row->evidence_strength );
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printf(
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'<tr><td>%s</td><td>%s</td><td>%s</td><td>%s</td><td>%s</td></tr>',
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esc_html( $row->route ),
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esc_html( $dose ),
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esc_html( $row->population ),
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esc_html( $evidence_label ),
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esc_html( $row->source )
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);
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}
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echo '</tbody></table>';
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}
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printf(
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'<p class="description">%s</p>',
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esc_html__( 'Dosing rows are managed via the REST API or AI Candidate Queue. Direct admin editing coming in v0.2.', 'peptide-repo-core' )
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);
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}
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/**
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* Render the Legal Status meta box (read-only summary).
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*
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* @param \WP_Post $post Current post.
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* @return void
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*/
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public function render_legal_box( \WP_Post $post ): void {
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if ( 'auto-draft' === $post->post_status ) {
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echo '<p>' . esc_html__( 'Save the peptide first, then add legal data.', 'peptide-repo-core' ) . '</p>';
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return;
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}
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$repo = new PR_Core_Legal_Repository();
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$cells = $repo->find_by_peptide( $post->ID );
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if ( empty( $cells ) ) {
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echo '<p>' . esc_html__( 'No legal status data yet.', 'peptide-repo-core' ) . '</p>';
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} else {
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echo '<table class="widefat striped"><thead><tr>';
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echo '<th>' . esc_html__( 'Country', 'peptide-repo-core' ) . '</th>';
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echo '<th>' . esc_html__( 'Status', 'peptide-repo-core' ) . '</th>';
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echo '<th>' . esc_html__( 'Framework', 'peptide-repo-core' ) . '</th>';
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echo '<th>' . esc_html__( 'Verified', 'peptide-repo-core' ) . '</th>';
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echo '</tr></thead><tbody>';
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foreach ( $cells as $cell ) {
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printf(
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'<tr><td>%s</td><td>%s</td><td>%s</td><td>%s</td></tr>',
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esc_html( $cell->country_code ),
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esc_html( ucfirst( $cell->status ) ),
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esc_html( $cell->regulatory_framework ?? '—' ),
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esc_html( $cell->last_verified_at )
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);
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}
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echo '</tbody></table>';
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}
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printf(
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'<p class="description">%s</p>',
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esc_html__( 'Legal cells are managed via the REST API. Direct admin editing coming in v0.2.', 'peptide-repo-core' )
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);
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}
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/**
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* Save peptide meta fields on post save.
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*
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* Side effects: updates post meta.
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*
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* @param int $post_id Post ID.
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* @param \WP_Post $post Post object.
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* @return void
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*/
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public function save_meta( int $post_id, \WP_Post $post ): void {
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if ( ! isset( $_POST['pr_core_meta_nonce'] ) ) {
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return;
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}
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if ( ! wp_verify_nonce( sanitize_text_field( wp_unslash( $_POST['pr_core_meta_nonce'] ) ), 'pr_core_save_meta' ) ) {
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return;
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}
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if ( ! current_user_can( PR_Core_Peptide_CPT::CAPABILITY ) ) {
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return;
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}
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if ( defined( 'DOING_AUTOSAVE' ) && DOING_AUTOSAVE ) {
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return;
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}
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$meta_fields = PR_Core_Peptide_CPT::get_meta_fields();
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foreach ( $meta_fields as $key => $config ) {
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$input_key = 'pr_core_' . $key;
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if ( ! isset( $_POST[ $input_key ] ) ) {
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continue;
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}
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$raw = wp_unslash( $_POST[ $input_key ] );
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$clean = is_callable( $config['sanitize'] )
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? call_user_func( $config['sanitize'], $raw )
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: sanitize_text_field( (string) $raw );
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update_post_meta( $post_id, $key, $clean );
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}
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// Set last_editorial_review_at when status changes to published.
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$new_review_status = sanitize_text_field( $_POST['pr_core_editorial_review_status'] ?? '' );
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if ( 'published' === $new_review_status ) {
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$old_status = get_post_meta( $post_id, 'editorial_review_status', true );
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if ( $old_status !== 'published' ) {
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update_post_meta( $post_id, 'last_editorial_review_at', current_time( 'mysql' ) );
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update_post_meta( $post_id, 'medical_editor_id', get_current_user_id() );
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}
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}
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do_action( 'pr_core_after_peptide_publish', $post_id, $post );
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}
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}
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