peptide-repo/peptide-repo-core
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style: auto-fix PHPCS violations via phpcbf

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peptiderepo
2026-06-16 15:26:16 +00:00
parent 08d7696444
commit b9158d7dca
45 changed files with 1018 additions and 658 deletions
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22
includes/repositories/class-pr-core-dosing-repository.php
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@@ -39,12 +39,12 @@ class PR_Core_Dosing_Repository {
* @param array<string, mixed> $filters Optional: route, population, evidence_strength.
* @return PR_Core_Dosing_Row_DTO[]
*/
public function find_by_peptide( int $peptide_id, array $filters = [] ): array {
public function find_by_peptide( int $peptide_id, array $filters = array() ): array {
global $wpdb;
$table = $wpdb->prefix . 'pr_dosing_rows';
$where = [ 'peptide_id = %d', 'superseded_by_id IS NULL' ];
$params = [ $peptide_id ];
$where = array( 'peptide_id = %d', 'superseded_by_id IS NULL' );
$params = array( $peptide_id );
if ( ! empty( $filters['route'] ) ) {
$where[] = 'route = %s';
@@ -70,7 +70,7 @@ class PR_Core_Dosing_Repository {
...$params
),
ARRAY_A
) ?: [];
) ?: array();
return array_map(
static fn( array $row ) => new PR_Core_Dosing_Row_DTO( $row ),
@@ -92,7 +92,7 @@ class PR_Core_Dosing_Repository {
global $wpdb;
$table = $wpdb->prefix . 'pr_dosing_rows';
$row = $this->sanitize_row( $data );
$row = $this->sanitize_row( $data );
$row['added_at'] = current_time( 'mysql' );
$row['schema_version'] = 1;
@@ -137,10 +137,10 @@ class PR_Core_Dosing_Repository {
// phpcs:ignore WordPress.DB.DirectDatabaseQuery.DirectQuery
$wpdb->update(
$table,
[ 'superseded_by_id' => $new_id ],
[ 'id' => $old_id ],
[ '%d' ],
[ '%d' ]
array( 'superseded_by_id' => $new_id ),
array( 'id' => $old_id ),
array( '%d' ),
array( '%d' )
);
return $new_id;
@@ -172,7 +172,7 @@ class PR_Core_Dosing_Repository {
* @return array<string, mixed> Sanitized row.
*/
private function sanitize_row( array $data ): array {
return [
return array(
'peptide_id' => absint( $data['peptide_id'] ?? 0 ),
'dose_min' => isset( $data['dose_min'] ) ? (float) $data['dose_min'] : null,
'dose_max' => isset( $data['dose_max'] ) ? (float) $data['dose_max'] : null,
@@ -195,6 +195,6 @@ class PR_Core_Dosing_Repository {
'added_by' => absint( $data['added_by'] ?? get_current_user_id() ),
'reviewed_by' => isset( $data['reviewed_by'] ) ? absint( $data['reviewed_by'] ) : null,
'reviewed_at' => $data['reviewed_at'] ?? null,
];
);
}
}