peptide-repo-core

peptide-repo/peptide-repo-core

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Author	SHA1	Message	Date
peptiderepo	0bbb75fd26	fix(schema): v0.6.2 — move Drug/FAQ injection to wpseo_schema_graph; fix peptide 500 Root cause: inject_graph_pieces() added plain PHP arrays to wpseo_schema_graph_pieces. Yoast Schema_Generator::filter_graph_pieces_to_generate() calls get_class() + is_needed() on every piece expecting Abstract_Schema_Piece objects — a plain array produces: PHP Fatal: get_class(): Argument #1 ($object) must be of type object, array given. All peptide monograph pages returned HTTP 500; non-peptide pages were unaffected (is_singular guard). Fix: remove wpseo_schema_graph_pieces hook entirely. New inject_graph_nodes() method hooks wpseo_schema_graph at priority 12 (after enrich_webpage_piece at 11), which receives the fully-assembled graph as array-of-arrays — safe for plain array appends. Also adds regression test (test-jsonld-peptide-piece.php) that: - Reproduces the v0.6.1 get_class(array) TypeError (fails-before) - Confirms inject_graph_nodes Drug+FAQ emission is correct (passes-after) Agent-Session: jsonld-peptide-piece-fix v0.6.2	2026-06-13 07:12:46 +00:00
peptiderepo	e9d97b51e2	peptide-repo-core v0.6.0: peptide schema backfill + Yoast-integrated Drug/MedicalWebPage/FAQ (#19 ) Backfill psa_->_pr_ meta (migration 0004 + PubChem fallback); enrich Drug node with {permalink}#drug @id + molecularFormula/Weight/alternateName; rewrite emitter into Yoast schema graph (MedicalWebPage retype + FAQPage, no duplicate nodes). QA: APPROVE (independent) — qa-reviews/peptide-repo-core/2026-06-13-817690c1b6ec2118ddcf3b8cfe8bc5ea7f3933b3.md Agent-Session: peptide-schema-backfill v0.6.0 merge	2026-06-13 13:09:56 +07:00
peptiderepo	808b2509d8	feat: initial peptide-repo-core plugin (v0.1.0) — canonical schema sprint Implements ADR-0002: canonical peptide schema as shared data layer for the peptiderepo.com ecosystem. All Tier 1 tools (Reconstitution Calculator, Dosage Reference, Legal Status Tracker, PSA enhancements) build on this. Includes: - pr_peptide CPT with REST, taxonomies, 11 meta fields - 3 custom tables: pr_dosing_rows, pr_legal_cells, pr_ai_candidate_queue - Sequential migration runner with schema versioning - 4 typed DTOs and 4 repository classes (full CRUD) - REST API (pr-core/v1): 6 endpoints (read public, write auth-gated) - Admin UI: 3 meta boxes, custom columns, AI candidate queue page - Shared disclaimer component (shortcode + static API) - JSON-LD Drug schema emission on single peptide pages - Seed data fixture (3 peptides, 10 dosing rows, 5 legal cells) - Full teardown in uninstall.php - CI: PHP lint 8.0-8.2, PHPCS WordPress, 300-line check All 22 PHP files under 300 lines. Highest: peptide-cpt at 265. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>	2026-04-17 07:36:12 +07:00

Author

SHA1

Message

Date

peptiderepo

0bbb75fd26

fix(schema): v0.6.2 — move Drug/FAQ injection to wpseo_schema_graph; fix peptide 500

Root cause: inject_graph_pieces() added plain PHP arrays to wpseo_schema_graph_pieces.
Yoast Schema_Generator::filter_graph_pieces_to_generate() calls get_class() +
is_needed() on every piece expecting Abstract_Schema_Piece objects — a plain array
produces: PHP Fatal: get_class(): Argument #1 ($object) must be of type object,
array given. All peptide monograph pages returned HTTP 500; non-peptide pages were
unaffected (is_singular guard).

Fix: remove wpseo_schema_graph_pieces hook entirely. New inject_graph_nodes() method
hooks wpseo_schema_graph at priority 12 (after enrich_webpage_piece at 11), which
receives the fully-assembled graph as array-of-arrays — safe for plain array appends.

Also adds regression test (test-jsonld-peptide-piece.php) that:
- Reproduces the v0.6.1 get_class(array) TypeError (fails-before)
- Confirms inject_graph_nodes Drug+FAQ emission is correct (passes-after)

Agent-Session: jsonld-peptide-piece-fix v0.6.2

2026-06-13 07:12:46 +00:00

peptiderepo

e9d97b51e2

peptide-repo-core v0.6.0: peptide schema backfill + Yoast-integrated Drug/MedicalWebPage/FAQ (#19 )

Backfill psa_*->_pr_* meta (migration 0004 + PubChem fallback); enrich Drug node with {permalink}#drug @id + molecularFormula/Weight/alternateName; rewrite emitter into Yoast schema graph (MedicalWebPage retype + FAQPage, no duplicate nodes).

QA: APPROVE (independent) — qa-reviews/peptide-repo-core/2026-06-13-817690c1b6ec2118ddcf3b8cfe8bc5ea7f3933b3.md

Agent-Session: peptide-schema-backfill v0.6.0 merge

2026-06-13 13:09:56 +07:00

peptiderepo

808b2509d8

feat: initial peptide-repo-core plugin (v0.1.0) — canonical schema sprint

Implements ADR-0002: canonical peptide schema as shared data layer for
the peptiderepo.com ecosystem. All Tier 1 tools (Reconstitution Calculator,
Dosage Reference, Legal Status Tracker, PSA enhancements) build on this.

Includes:
- pr_peptide CPT with REST, taxonomies, 11 meta fields
- 3 custom tables: pr_dosing_rows, pr_legal_cells, pr_ai_candidate_queue
- Sequential migration runner with schema versioning
- 4 typed DTOs and 4 repository classes (full CRUD)
- REST API (pr-core/v1): 6 endpoints (read public, write auth-gated)
- Admin UI: 3 meta boxes, custom columns, AI candidate queue page
- Shared disclaimer component (shortcode + static API)
- JSON-LD Drug schema emission on single peptide pages
- Seed data fixture (3 peptides, 10 dosing rows, 5 legal cells)
- Full teardown in uninstall.php
- CI: PHP lint 8.0-8.2, PHPCS WordPress, 300-line check

All 22 PHP files under 300 lines. Highest: peptide-cpt at 265.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

2026-04-17 07:36:12 +07:00

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