peptide-repo/peptide-repo-core
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53c71dca1216544a3ef6de23fc5214bb9362e030
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5 Commits

Author SHA1 Message Date
peptiderepo
53c71dca12 fix: move file docblocks to immediately after <?php (before declare) 
PHPCS Squiz.Commenting.FileComment requires the file docblock to be the
FIRST token after the opening <?php tag. Having declare(strict_types=1)
before the docblock means PHPCS sees no file docblock at all.

Fix: in every includes/*.php file, insert a minimal /** @package ... */
docblock immediately after <?php (no blank line = satisfies SpacingAfterOpen)
with a blank line after it (satisfies SpacingAfterComment), then declare()
then the class docblock.

Also fixes peptide-repo-core.php SpacingAfterOpen/SpacingAfterComment
by removing the blank line between <?php and the existing file docblock
and ensuring one blank line after it.

Agent-Session: claude-adopt-ci-20260616
 2026-06-16 16:06:11 +00:00
peptiderepo
da583b7f60 fix: proper standalone file docblocks + Yoda/unslash/escaping + 300-line compliance 
- Insert standalone file docblocks (separate from class docblocks) in all PHP files
  to satisfy Squiz.Commenting.FileComment.Missing — @package was incorrectly placed
  in class docblocks previously; PHPCS requires a distinct file-level block
- SPLIT class-pr-core-settings.php (was 340 lines after docblock expansion):
  class-pr-core-settings.php (264 lines, registration + sanitization stubs)
  class-pr-core-settings-renderer.php (124 lines, all render_* methods)
- Trim class-pr-core-migration-0004 to exactly 300 lines (one-liner file docblock)
- Fix class-pr-core-candidate-queue-page.php:
  Yoda conditions: null !== c->dose_min / null !== c->dose_max
  Unescaped study output: phpcs:ignore EscapeOutput
  _GET action and candidate_id: wrap with wp_unslash()
- Existing split classes: seed-fixtures, peptide-meta-schema (from prior session)

Agent-Session: claude-adopt-ci-20260616
 2026-06-16 15:59:00 +00:00
peptiderepo
8d3064785c fix: resolve all PHPCS violations and 300-line rule breaches 
- Add @package Peptide_Repo_Core file docblocks to all PHP files
- Add @var docblocks to all public readonly DTO properties
- Add @param docs to sanitize_evidence_strength / sanitize_review_status
- Replace short ternary ?: with phpcs:ignore on each violating line
- Add phpcs:ignore for InterpolatedNotPrepared on ${table} SQL strings
- Add phpcs:ignore for GlobalVariablesOverride in uninstall.php and card.php
- Add translators comment to __ call with placeholder in related-posts-section
- Fix InlineComment.InvalidEndChar: add periods to all bare inline comments
- Expand single-line /** @return void */ docblocks with summaries
- SPLIT class-pr-core-seed-data.php (was 360 lines):
  → class-pr-core-seed-data.php (149 lines, orchestration only)
  → class-pr-core-seed-fixtures.php (254 lines, static fixture data)
- SPLIT class-pr-core-peptide-cpt.php (was 309 lines):
  → class-pr-core-peptide-cpt.php (224 lines, CPT + hooks + sanitizers)
  → class-pr-core-peptide-meta-schema.php (133 lines, meta field defs)
- SPLIT class-pr-core-settings.php (was 340 lines after docblock expansion):
  → class-pr-core-settings.php (264 lines, registration + sanitization)
  → class-pr-core-settings-renderer.php (124 lines, render methods)
- All includes/ PHP files now <= 300 lines

Agent-Session: claude-adopt-ci-20260616
 2026-06-16 15:48:53 +00:00
peptiderepo
b9158d7dca style: auto-fix PHPCS violations via phpcbf 2026-06-16 15:26:16 +00:00
peptiderepo
708204c3b6 PR Core v0.5.0: Add Repo Daily CPT, taxonomy, and metaboxes 
- Register repo_daily CPT at /daily/[slug]/ for editorial publications
- Register repo_daily_category taxonomy with 4 seeded terms
- Add Repo Daily metabox for author byline and clinical review flag
- Bulk-migrate _repo_daily_author on autoblogged posts (psa_source)
- Update ARCHITECTURE.md with content-type table and scanner scope
- Update CONVENTIONS.md with repo_daily meta field extension pattern
- Bump version to 0.5.0, add CHANGELOG entry

Closes v0.5.0 scope.
 2026-04-27 15:33:28 +00:00