Files
peptide-repo-core/includes/admin/class-pr-core-candidate-queue-page.php
peptiderepo 808b2509d8 feat: initial peptide-repo-core plugin (v0.1.0) — canonical schema sprint
Implements ADR-0002: canonical peptide schema as shared data layer for
the peptiderepo.com ecosystem. All Tier 1 tools (Reconstitution Calculator,
Dosage Reference, Legal Status Tracker, PSA enhancements) build on this.

Includes:
- pr_peptide CPT with REST, taxonomies, 11 meta fields
- 3 custom tables: pr_dosing_rows, pr_legal_cells, pr_ai_candidate_queue
- Sequential migration runner with schema versioning
- 4 typed DTOs and 4 repository classes (full CRUD)
- REST API (pr-core/v1): 6 endpoints (read public, write auth-gated)
- Admin UI: 3 meta boxes, custom columns, AI candidate queue page
- Shared disclaimer component (shortcode + static API)
- JSON-LD Drug schema emission on single peptide pages
- Seed data fixture (3 peptides, 10 dosing rows, 5 legal cells)
- Full teardown in uninstall.php
- CI: PHP lint 8.0-8.2, PHPCS WordPress, 300-line check

All 22 PHP files under 300 lines. Highest: peptide-cpt at 265.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-17 07:36:12 +07:00

143 lines
5.1 KiB
PHP
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<?php
declare(strict_types=1);
/**
* Admin page for the AI Candidate Queue.
*
* What: Renders a review screen for AI-extracted dosing candidates.
* Who calls it: PR_Core_Admin::add_admin_pages() registers this as a submenu page.
* Dependencies: PR_Core_Candidate_Queue_Repository, PR_Core_Peptide_Repository.
*
* Researchers see pending candidates sorted by confidence, can approve/reject with notes.
*
* @see admin/class-pr-core-admin.php — Menu registration.
* @see repositories/class-pr-core-candidate-queue-repository.php — Data layer.
*/
class PR_Core_Candidate_Queue_Page {
/**
* Render the candidate queue admin page.
*
* Side effects: processes approve/reject actions, outputs HTML.
*
* @return void
*/
public function render(): void {
if ( ! current_user_can( PR_Core_Peptide_CPT::CAPABILITY ) ) {
wp_die( esc_html__( 'You do not have permission to access this page.', 'peptide-repo-core' ) );
}
$this->handle_actions();
$repo = new PR_Core_Candidate_Queue_Repository();
$candidates = $repo->find_by_status( 'pending' );
$pep_repo = new PR_Core_Peptide_Repository();
echo '<div class="wrap">';
echo '<h1>' . esc_html__( 'AI Candidate Queue', 'peptide-repo-core' ) . '</h1>';
echo '<p>' . esc_html__( 'Review AI-extracted dosing data candidates. Approved rows are copied to the dosing table.', 'peptide-repo-core' ) . '</p>';
if ( empty( $candidates ) ) {
echo '<p><strong>' . esc_html__( 'No pending candidates.', 'peptide-repo-core' ) . '</strong></p>';
echo '</div>';
return;
}
echo '<table class="widefat striped">';
echo '<thead><tr>';
echo '<th>' . esc_html__( 'Peptide', 'peptide-repo-core' ) . '</th>';
echo '<th>' . esc_html__( 'Route', 'peptide-repo-core' ) . '</th>';
echo '<th>' . esc_html__( 'Dose Range', 'peptide-repo-core' ) . '</th>';
echo '<th>' . esc_html__( 'Population', 'peptide-repo-core' ) . '</th>';
echo '<th>' . esc_html__( 'Study', 'peptide-repo-core' ) . '</th>';
echo '<th>' . esc_html__( 'Confidence', 'peptide-repo-core' ) . '</th>';
echo '<th>' . esc_html__( 'Actions', 'peptide-repo-core' ) . '</th>';
echo '</tr></thead><tbody>';
foreach ( $candidates as $c ) {
$peptide = $pep_repo->find_by_id( $c->peptide_id );
$name = $peptide ? $peptide->title : '#' . $c->peptide_id;
$dose = $c->dose_min !== null ? number_format( $c->dose_min, 2 ) : '?';
if ( $c->dose_max !== null && $c->dose_max !== $c->dose_min ) {
$dose .= ' – ' . number_format( $c->dose_max, 2 );
}
$dose .= ' ' . esc_html( $c->dose_unit );
$study = $c->study_title ? esc_html( mb_substr( $c->study_title, 0, 60 ) ) : '—';
if ( $c->citation_pubmed_id ) {
$study .= sprintf( ' <a href="https://pubmed.ncbi.nlm.nih.gov/%s/" target="_blank">PubMed</a>', esc_attr( $c->citation_pubmed_id ) );
}
$confidence_pct = number_format( $c->extraction_confidence * 100, 0 ) . '%';
$approve_url = wp_nonce_url(
add_query_arg( [ 'action' => 'pr_core_approve', 'candidate_id' => $c->id ] ),
'pr_core_queue_action'
);
$reject_url = wp_nonce_url(
add_query_arg( [ 'action' => 'pr_core_reject', 'candidate_id' => $c->id ] ),
'pr_core_queue_action'
);
echo '<tr>';
printf( '<td>%s</td>', esc_html( $name ) );
printf( '<td>%s</td>', esc_html( $c->route ) );
printf( '<td>%s</td>', esc_html( $dose ) );
printf( '<td>%s</td>', esc_html( $c->population ) );
printf( '<td>%s</td>', $study ); // Contains escaped HTML + link.
printf( '<td>%s</td>', esc_html( $confidence_pct ) );
printf(
'<td><a href="%s" class="button button-primary button-small">%s</a> <a href="%s" class="button button-small">%s</a></td>',
esc_url( $approve_url ),
esc_html__( 'Approve', 'peptide-repo-core' ),
esc_url( $reject_url ),
esc_html__( 'Reject', 'peptide-repo-core' )
);
echo '</tr>';
}
echo '</tbody></table></div>';
}
/**
* Process approve/reject actions from query parameters.
*
* Side effects: database writes, admin notices.
*
* @return void
*/
private function handle_actions(): void {
$action = sanitize_text_field( $_GET['action'] ?? '' );
if ( ! in_array( $action, [ 'pr_core_approve', 'pr_core_reject' ], true ) ) {
return;
}
if ( ! check_admin_referer( 'pr_core_queue_action' ) ) {
return;
}
$candidate_id = absint( $_GET['candidate_id'] ?? 0 );
if ( 0 === $candidate_id ) {
return;
}
$repo = new PR_Core_Candidate_Queue_Repository();
$reviewer_id = get_current_user_id();
if ( 'pr_core_approve' === $action ) {
$dosing_id = $repo->approve( $candidate_id, $reviewer_id );
if ( $dosing_id > 0 ) {
add_action( 'admin_notices', static function () {
echo '<div class="notice notice-success is-dismissible"><p>' . esc_html__( 'Candidate approved and added to dosing data.', 'peptide-repo-core' ) . '</p></div>';
} );
}
} else {
$repo->reject( $candidate_id, $reviewer_id );
add_action( 'admin_notices', static function () {
echo '<div class="notice notice-warning is-dismissible"><p>' . esc_html__( 'Candidate rejected.', 'peptide-repo-core' ) . '</p></div>';
} );
}
}
}