808b2509d8
Implements ADR-0002: canonical peptide schema as shared data layer for the peptiderepo.com ecosystem. All Tier 1 tools (Reconstitution Calculator, Dosage Reference, Legal Status Tracker, PSA enhancements) build on this. Includes: - pr_peptide CPT with REST, taxonomies, 11 meta fields - 3 custom tables: pr_dosing_rows, pr_legal_cells, pr_ai_candidate_queue - Sequential migration runner with schema versioning - 4 typed DTOs and 4 repository classes (full CRUD) - REST API (pr-core/v1): 6 endpoints (read public, write auth-gated) - Admin UI: 3 meta boxes, custom columns, AI candidate queue page - Shared disclaimer component (shortcode + static API) - JSON-LD Drug schema emission on single peptide pages - Seed data fixture (3 peptides, 10 dosing rows, 5 legal cells) - Full teardown in uninstall.php - CI: PHP lint 8.0-8.2, PHPCS WordPress, 300-line check All 22 PHP files under 300 lines. Highest: peptide-cpt at 265. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
96 lines
4.1 KiB
PHP
96 lines
4.1 KiB
PHP
<?php
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declare(strict_types=1);
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/**
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* Typed data-transfer object for an AI candidate queue entry.
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*
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* What: Immutable value object wrapping a row from pr_ai_candidate_queue.
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* Who calls it: PR_Core_Candidate_Queue_Repository returns these.
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* Dependencies: None.
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*
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* @see migrations/class-pr-core-migration-0003-candidate-queue.php — Table schema.
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* @see repositories/class-pr-core-candidate-queue-repository.php — Creates these.
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*/
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class PR_Core_Candidate_DTO {
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public readonly int $id;
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public readonly int $peptide_id;
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public readonly ?float $dose_min;
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public readonly ?float $dose_max;
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public readonly string $dose_unit;
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public readonly string $route;
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public readonly ?string $frequency;
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public readonly ?int $duration_value;
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public readonly ?string $duration_unit;
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public readonly string $population;
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public readonly ?string $indication;
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public readonly string $evidence_strength;
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public readonly ?string $study_title;
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public readonly ?int $study_year;
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public readonly ?string $citation_pubmed_id;
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public readonly ?string $citation_doi;
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public readonly ?string $citation_url;
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public readonly ?string $notes;
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public readonly float $extraction_confidence;
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public readonly string $queue_status;
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public readonly string $extracted_at;
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public readonly ?int $reviewed_by;
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public readonly ?string $reviewed_at;
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public readonly ?string $reviewer_notes;
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/**
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* @param array<string, mixed> $data Associative array from database row.
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*/
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public function __construct( array $data ) {
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$this->id = (int) ( $data['id'] ?? 0 );
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$this->peptide_id = (int) ( $data['peptide_id'] ?? 0 );
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$this->dose_min = isset( $data['dose_min'] ) ? (float) $data['dose_min'] : null;
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$this->dose_max = isset( $data['dose_max'] ) ? (float) $data['dose_max'] : null;
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$this->dose_unit = (string) ( $data['dose_unit'] ?? '' );
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$this->route = (string) ( $data['route'] ?? '' );
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$this->frequency = $data['frequency'] ?? null;
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$this->duration_value = isset( $data['duration_value'] ) ? (int) $data['duration_value'] : null;
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$this->duration_unit = $data['duration_unit'] ?? null;
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$this->population = (string) ( $data['population'] ?? '' );
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$this->indication = $data['indication'] ?? null;
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$this->evidence_strength = (string) ( $data['evidence_strength'] ?? 'preclinical' );
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$this->study_title = $data['study_title'] ?? null;
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$this->study_year = isset( $data['study_year'] ) ? (int) $data['study_year'] : null;
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$this->citation_pubmed_id = $data['citation_pubmed_id'] ?? null;
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$this->citation_doi = $data['citation_doi'] ?? null;
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$this->citation_url = $data['citation_url'] ?? null;
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$this->notes = $data['notes'] ?? null;
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$this->extraction_confidence = (float) ( $data['extraction_confidence'] ?? 0 );
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$this->queue_status = (string) ( $data['queue_status'] ?? 'pending' );
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$this->extracted_at = (string) ( $data['extracted_at'] ?? '' );
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$this->reviewed_by = isset( $data['reviewed_by'] ) ? (int) $data['reviewed_by'] : null;
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$this->reviewed_at = $data['reviewed_at'] ?? null;
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$this->reviewer_notes = $data['reviewer_notes'] ?? null;
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}
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/**
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* Convert to associative array for admin UI output.
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*
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* @return array<string, mixed>
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*/
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public function to_array(): array {
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return [
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'id' => $this->id,
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'peptide_id' => $this->peptide_id,
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'dose_min' => $this->dose_min,
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'dose_max' => $this->dose_max,
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'dose_unit' => $this->dose_unit,
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'route' => $this->route,
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'frequency' => $this->frequency,
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'population' => $this->population,
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'indication' => $this->indication,
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'evidence_strength' => $this->evidence_strength,
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'study_title' => $this->study_title,
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'citation_pubmed_id' => $this->citation_pubmed_id,
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'extraction_confidence' => $this->extraction_confidence,
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'queue_status' => $this->queue_status,
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'extracted_at' => $this->extracted_at,
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];
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}
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}
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