53c71dca12
PHPCS Squiz.Commenting.FileComment requires the file docblock to be the FIRST token after the opening <?php tag. Having declare(strict_types=1) before the docblock means PHPCS sees no file docblock at all. Fix: in every includes/*.php file, insert a minimal /** @package ... */ docblock immediately after <?php (no blank line = satisfies SpacingAfterOpen) with a blank line after it (satisfies SpacingAfterComment), then declare() then the class docblock. Also fixes peptide-repo-core.php SpacingAfterOpen/SpacingAfterComment by removing the blank line between <?php and the existing file docblock and ensuring one blank line after it. Agent-Session: claude-adopt-ci-20260616
74 lines
2.2 KiB
PHP
74 lines
2.2 KiB
PHP
<?php
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/**
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* @package Peptide_Repo_Core
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*/
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declare(strict_types=1);
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/**
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* Creates the high-cardinality dosing data table (1:many with peptide)
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*
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* @package Peptide_Repo_Core
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*/
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/**
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* Migration 0001: Create the pr_dosing_rows table.
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*
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* What: Creates the high-cardinality dosing data table (1:many with peptide).
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* Who calls it: PR_Core_Migration_Runner::run_pending().
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* Dependencies: WordPress $wpdb, dbDelta().
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*
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* @see ARCHITECTURE.md — Table schema specification.
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*/
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class PR_Core_Migration_0001_Dosing_Rows {
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/**
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* Create the pr_dosing_rows table.
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*
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* Side effects: database DDL via dbDelta().
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*
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* @return void
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*/
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public function up(): void {
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global $wpdb;
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$table = $wpdb->prefix . 'pr_dosing_rows';
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$charset = $wpdb->get_charset_collate();
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$sql = "CREATE TABLE {$table} (
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id BIGINT UNSIGNED NOT NULL AUTO_INCREMENT,
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peptide_id BIGINT UNSIGNED NOT NULL,
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dose_min DECIMAL(12,4) NULL,
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dose_max DECIMAL(12,4) NULL,
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dose_unit VARCHAR(16) NOT NULL,
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route VARCHAR(32) NOT NULL,
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frequency VARCHAR(64) NULL,
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duration_value INT UNSIGNED NULL,
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duration_unit VARCHAR(16) NULL,
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population VARCHAR(32) NOT NULL,
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indication VARCHAR(255) NULL,
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evidence_strength VARCHAR(32) NOT NULL,
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study_title VARCHAR(500) NULL,
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study_year SMALLINT UNSIGNED NULL,
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citation_pubmed_id VARCHAR(16) NULL,
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citation_doi VARCHAR(128) NULL,
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citation_url VARCHAR(500) NULL,
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notes TEXT NULL,
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schema_version SMALLINT UNSIGNED NOT NULL DEFAULT 1,
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source VARCHAR(32) NOT NULL DEFAULT 'manual',
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ai_candidate_id BIGINT UNSIGNED NULL,
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added_by BIGINT UNSIGNED NOT NULL,
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added_at DATETIME NOT NULL,
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reviewed_by BIGINT UNSIGNED NULL,
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reviewed_at DATETIME NULL,
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superseded_by_id BIGINT UNSIGNED NULL,
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PRIMARY KEY (id),
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KEY idx_peptide (peptide_id),
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KEY idx_peptide_route (peptide_id, route),
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KEY idx_peptide_population (peptide_id, population),
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KEY idx_pubmed (citation_pubmed_id)
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) {$charset};";
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dbDelta( $sql );
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}
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}
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