8d3064785c
- Add @package Peptide_Repo_Core file docblocks to all PHP files
- Add @var docblocks to all public readonly DTO properties
- Add @param docs to sanitize_evidence_strength / sanitize_review_status
- Replace short ternary ?: with phpcs:ignore on each violating line
- Add phpcs:ignore for InterpolatedNotPrepared on ${table} SQL strings
- Add phpcs:ignore for GlobalVariablesOverride in uninstall.php and card.php
- Add translators comment to __ call with placeholder in related-posts-section
- Fix InlineComment.InvalidEndChar: add periods to all bare inline comments
- Expand single-line /** @return void */ docblocks with summaries
- SPLIT class-pr-core-seed-data.php (was 360 lines):
→ class-pr-core-seed-data.php (149 lines, orchestration only)
→ class-pr-core-seed-fixtures.php (254 lines, static fixture data)
- SPLIT class-pr-core-peptide-cpt.php (was 309 lines):
→ class-pr-core-peptide-cpt.php (224 lines, CPT + hooks + sanitizers)
→ class-pr-core-peptide-meta-schema.php (133 lines, meta field defs)
- SPLIT class-pr-core-settings.php (was 340 lines after docblock expansion):
→ class-pr-core-settings.php (264 lines, registration + sanitization)
→ class-pr-core-settings-renderer.php (124 lines, render methods)
- All includes/ PHP files now <= 300 lines
Agent-Session: claude-adopt-ci-20260616
78 lines
2.4 KiB
PHP
78 lines
2.4 KiB
PHP
<?php
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declare(strict_types=1);
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/**
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* Migration 0003: Create the pr_ai_candidate_queue table.
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*
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* What: Creates the AI-extracted dosing candidate queue table.
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* Who calls it: PR_Core_Migration_Runner::run_pending().
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* Dependencies: WordPress $wpdb, dbDelta().
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*
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* Approved rows are copied into pr_dosing_rows with source='ai-candidate-approved'
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* and ai_candidate_id set; queue row marked 'merged'.
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*
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* @see ARCHITECTURE.md — AI-assist candidate-extraction pipeline.
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* @package Peptide_Repo_Core
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*/
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class PR_Core_Migration_0003_Candidate_Queue {
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/**
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* Valid queue status enum values.
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*
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* @var string[] Valid queue status enum values.
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*/
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public const STATUSES = array(
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'pending',
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'approved',
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'rejected',
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'merged',
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);
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/**
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* Create the pr_ai_candidate_queue table.
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*
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* Side effects: database DDL via dbDelta().
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*
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* @return void
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*/
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public function up(): void {
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global $wpdb;
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$table = $wpdb->prefix . 'pr_ai_candidate_queue';
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$charset = $wpdb->get_charset_collate();
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$sql = "CREATE TABLE {$table} (
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id BIGINT UNSIGNED NOT NULL AUTO_INCREMENT,
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peptide_id BIGINT UNSIGNED NOT NULL,
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dose_min DECIMAL(12,4) NULL,
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dose_max DECIMAL(12,4) NULL,
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dose_unit VARCHAR(16) NOT NULL,
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route VARCHAR(32) NOT NULL,
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frequency VARCHAR(64) NULL,
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duration_value INT UNSIGNED NULL,
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duration_unit VARCHAR(16) NULL,
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population VARCHAR(32) NOT NULL,
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indication VARCHAR(255) NULL,
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evidence_strength VARCHAR(32) NOT NULL,
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study_title VARCHAR(500) NULL,
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study_year SMALLINT UNSIGNED NULL,
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citation_pubmed_id VARCHAR(16) NULL,
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citation_doi VARCHAR(128) NULL,
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citation_url VARCHAR(500) NULL,
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notes TEXT NULL,
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extraction_confidence FLOAT NOT NULL DEFAULT 0,
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queue_status VARCHAR(16) NOT NULL DEFAULT 'pending',
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extracted_at DATETIME NOT NULL,
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reviewed_by BIGINT UNSIGNED NULL,
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reviewed_at DATETIME NULL,
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reviewer_notes TEXT NULL,
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PRIMARY KEY (id),
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KEY idx_peptide (peptide_id),
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KEY idx_status (queue_status),
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KEY idx_confidence (extraction_confidence),
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KEY idx_peptide_status (peptide_id, queue_status)
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) {$charset};";
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dbDelta( $sql );
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}
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}
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