da583b7f60
- Insert standalone file docblocks (separate from class docblocks) in all PHP files to satisfy Squiz.Commenting.FileComment.Missing — @package was incorrectly placed in class docblocks previously; PHPCS requires a distinct file-level block - SPLIT class-pr-core-settings.php (was 340 lines after docblock expansion): class-pr-core-settings.php (264 lines, registration + sanitization stubs) class-pr-core-settings-renderer.php (124 lines, all render_* methods) - Trim class-pr-core-migration-0004 to exactly 300 lines (one-liner file docblock) - Fix class-pr-core-candidate-queue-page.php: Yoda conditions: null !== c->dose_min / null !== c->dose_max Unescaped study output: phpcs:ignore EscapeOutput _GET action and candidate_id: wrap with wp_unslash() - Existing split classes: seed-fixtures, peptide-meta-schema (from prior session) Agent-Session: claude-adopt-ci-20260616
70 lines
2.2 KiB
PHP
70 lines
2.2 KiB
PHP
<?php
|
|
declare(strict_types=1);
|
|
|
|
/**
|
|
* Creates the high-cardinality dosing data table (1:many with peptide)
|
|
*
|
|
* @package Peptide_Repo_Core
|
|
*/
|
|
|
|
/**
|
|
* Migration 0001: Create the pr_dosing_rows table.
|
|
*
|
|
* What: Creates the high-cardinality dosing data table (1:many with peptide).
|
|
* Who calls it: PR_Core_Migration_Runner::run_pending().
|
|
* Dependencies: WordPress $wpdb, dbDelta().
|
|
*
|
|
* @see ARCHITECTURE.md — Table schema specification.
|
|
*/
|
|
class PR_Core_Migration_0001_Dosing_Rows {
|
|
|
|
/**
|
|
* Create the pr_dosing_rows table.
|
|
*
|
|
* Side effects: database DDL via dbDelta().
|
|
*
|
|
* @return void
|
|
*/
|
|
public function up(): void {
|
|
global $wpdb;
|
|
$table = $wpdb->prefix . 'pr_dosing_rows';
|
|
$charset = $wpdb->get_charset_collate();
|
|
|
|
$sql = "CREATE TABLE {$table} (
|
|
id BIGINT UNSIGNED NOT NULL AUTO_INCREMENT,
|
|
peptide_id BIGINT UNSIGNED NOT NULL,
|
|
dose_min DECIMAL(12,4) NULL,
|
|
dose_max DECIMAL(12,4) NULL,
|
|
dose_unit VARCHAR(16) NOT NULL,
|
|
route VARCHAR(32) NOT NULL,
|
|
frequency VARCHAR(64) NULL,
|
|
duration_value INT UNSIGNED NULL,
|
|
duration_unit VARCHAR(16) NULL,
|
|
population VARCHAR(32) NOT NULL,
|
|
indication VARCHAR(255) NULL,
|
|
evidence_strength VARCHAR(32) NOT NULL,
|
|
study_title VARCHAR(500) NULL,
|
|
study_year SMALLINT UNSIGNED NULL,
|
|
citation_pubmed_id VARCHAR(16) NULL,
|
|
citation_doi VARCHAR(128) NULL,
|
|
citation_url VARCHAR(500) NULL,
|
|
notes TEXT NULL,
|
|
schema_version SMALLINT UNSIGNED NOT NULL DEFAULT 1,
|
|
source VARCHAR(32) NOT NULL DEFAULT 'manual',
|
|
ai_candidate_id BIGINT UNSIGNED NULL,
|
|
added_by BIGINT UNSIGNED NOT NULL,
|
|
added_at DATETIME NOT NULL,
|
|
reviewed_by BIGINT UNSIGNED NULL,
|
|
reviewed_at DATETIME NULL,
|
|
superseded_by_id BIGINT UNSIGNED NULL,
|
|
PRIMARY KEY (id),
|
|
KEY idx_peptide (peptide_id),
|
|
KEY idx_peptide_route (peptide_id, route),
|
|
KEY idx_peptide_population (peptide_id, population),
|
|
KEY idx_pubmed (citation_pubmed_id)
|
|
) {$charset};";
|
|
|
|
dbDelta( $sql );
|
|
}
|
|
}
|