f086b89e2d
Consolidates the `peptide` CPT under PR Core ownership, dropping the `pr_peptide` slug-collision that was 404ing all 89 peptide detail pages. - POST_TYPE: pr_peptide -> peptide - TAX_CATEGORY: pr_peptide_category -> peptide_category - TAX_FAMILY + pr_peptide_family taxonomy removed - Defensive post_type_exists/taxonomy_exists guards on both registrations - Args harmonized as superset of PSA + prior PR Core (adds thumbnail support) - Activation hook + init:999 version-change flush handler - Uninstall scoped to _pr_core_authored flag (PSA-authored posts survive) - Plugin version 0.1.1 -> 0.2.0, CHANGELOG in same commit - ARCHITECTURE.md + CONVENTIONS.md updated with CPT ownership rule QA gate verdict: PASS (qa-reviews/peptide-repo-core/2026-04-22-874f93b.md) Sibling release: peptiderepo/peptide-search-ai#15 (PSA v4.5.0) Known follow-up: manage_peptide_content capability is not granted to any role as of v0.2.0. No current UI/theme reads or writes PR Core-defined meta keys, so no regression. Follow-up thread to decide role assignment.
92 lines
4.0 KiB
PHP
92 lines
4.0 KiB
PHP
<?php
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declare(strict_types=1);
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/**
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* Typed data-transfer object for a peptide record.
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*
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* What: Immutable value object wrapping a peptide post + its meta fields.
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* Who calls it: PR_Core_Peptide_Repository returns these; consumers read them.
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* Dependencies: None.
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*
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* @see cpt/class-pr-core-peptide-cpt.php — Meta field definitions.
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* @see repositories/class-pr-core-peptide-repository.php — Creates these from WP_Post.
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*/
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class PR_Core_Peptide_DTO {
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public readonly int $id;
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public readonly string $title;
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public readonly string $slug;
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public readonly string $content;
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public readonly string $excerpt;
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public readonly string $status;
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public readonly string $display_name;
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/** @var string[] */
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public readonly array $aliases;
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public readonly string $molecular_formula;
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public readonly float $molecular_weight;
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public readonly string $cas_number;
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public readonly string $drugbank_id;
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public readonly string $chembl_id;
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public readonly string $evidence_strength;
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public readonly string $editorial_review_status;
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public readonly string $last_editorial_review_at;
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public readonly int $medical_editor_id;
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/** @var string[] Category term names. */
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public readonly array $categories;
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/** @var string[] Family term names. */
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public readonly array $families;
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/**
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* @param array<string, mixed> $data Associative array of peptide fields.
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*/
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public function __construct( array $data ) {
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$this->id = (int) ( $data['id'] ?? 0 );
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$this->title = (string) ( $data['title'] ?? '' );
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$this->slug = (string) ( $data['slug'] ?? '' );
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$this->content = (string) ( $data['content'] ?? '' );
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$this->excerpt = (string) ( $data['excerpt'] ?? '' );
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$this->status = (string) ( $data['status'] ?? 'draft' );
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$this->display_name = (string) ( $data['display_name'] ?? '' );
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$this->aliases = (array) ( $data['aliases'] ?? [] );
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$this->molecular_formula = (string) ( $data['molecular_formula'] ?? '' );
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$this->molecular_weight = (float) ( $data['molecular_weight'] ?? 0 );
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$this->cas_number = (string) ( $data['cas_number'] ?? '' );
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$this->drugbank_id = (string) ( $data['drugbank_id'] ?? '' );
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$this->chembl_id = (string) ( $data['chembl_id'] ?? '' );
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$this->evidence_strength = (string) ( $data['evidence_strength'] ?? 'preclinical' );
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$this->editorial_review_status = (string) ( $data['editorial_review_status'] ?? 'draft' );
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$this->last_editorial_review_at = (string) ( $data['last_editorial_review_at'] ?? '' );
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$this->medical_editor_id = (int) ( $data['medical_editor_id'] ?? 0 );
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$this->categories = (array) ( $data['categories'] ?? [] );
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$this->families = (array) ( $data['families'] ?? [] );
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}
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/**
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* Convert to associative array (e.g., for REST API responses).
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*
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* @return array<string, mixed>
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*/
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public function to_array(): array {
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return [
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'id' => $this->id,
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'title' => $this->title,
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'slug' => $this->slug,
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'excerpt' => $this->excerpt,
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'display_name' => $this->display_name,
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'aliases' => $this->aliases,
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'molecular_formula' => $this->molecular_formula,
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'molecular_weight' => $this->molecular_weight,
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'cas_number' => $this->cas_number,
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'drugbank_id' => $this->drugbank_id,
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'chembl_id' => $this->chembl_id,
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'evidence_strength' => $this->evidence_strength,
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'editorial_review_status' => $this->editorial_review_status,
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'last_editorial_review_at' => $this->last_editorial_review_at,
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'medical_editor_id' => $this->medical_editor_id,
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'categories' => $this->categories,
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'families' => $this->families,
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'url' => get_permalink( $this->id ),
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];
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}
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}
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