fix(ci): phpcbf auto-format + add missing bootstrap requires for tests
212 PHPCS formatting errors auto-fixed by phpcbf across 18 files. All remaining issues are warnings (exit 2), not errors — CI treats exit 2 as success via the same pattern as peptide-news-plugin. Also adds class-psa-ai-content.php and class-psa-directory-api.php to tests/bootstrap.php require list — both files exist in includes/ but were missing from bootstrap, causing 5 PHPUnit "Class not found" failures in AIGeneratorTest and DirectoryTest.
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peptiderepo
@@ -40,9 +40,13 @@ class PSA_Admin {
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/** Register settings fields — rendering delegated to PSA_Admin_Page. */
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public static function register_settings(): void {
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register_setting( 'psa_settings_group', 'psa_settings', array(
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'sanitize_callback' => array( __CLASS__, 'sanitize_settings' ),
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) );
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register_setting(
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'psa_settings_group',
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'psa_settings',
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array(
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'sanitize_callback' => array( __CLASS__, 'sanitize_settings' ),
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)
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);
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add_settings_section( 'psa_ai_section', __( 'OpenRouter API Settings', 'peptide-search-ai' ), array( 'PSA_Admin_Page', 'render_section_description' ), 'peptide-search-ai' );
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add_settings_field( 'api_key', __( 'API Key', 'peptide-search-ai' ), array( 'PSA_Admin_Page', 'render_api_key_field' ), 'peptide-search-ai', 'psa_ai_section' );
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@@ -95,18 +99,27 @@ class PSA_Admin {
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if ( 'migrate_categories' === $action && wp_verify_nonce( $nonce, 'psa_migrate_categories' ) ) {
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self::run_category_migration();
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add_action( 'admin_notices', function () {
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echo '<div class="notice notice-success is-dismissible"><p>' . esc_html__( 'Category migration completed.', 'peptide-search-ai' ) . '</p></div>';
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} );
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add_action(
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'admin_notices',
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function () {
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echo '<div class="notice notice-success is-dismissible"><p>' . esc_html__( 'Category migration completed.', 'peptide-search-ai' ) . '</p></div>';
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}
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);
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}
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if ( 'reenrich' === $action && wp_verify_nonce( $nonce, 'psa_reenrich' ) ) {
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$queued = self::queue_reenrichment();
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add_action( 'admin_notices', function () use ( $queued ) {
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echo '<div class="notice notice-success is-dismissible"><p>' . esc_html( sprintf(
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__( '%d peptides queued for re-enrichment.', 'peptide-search-ai' ), $queued
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) ) . '</p></div>';
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} );
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add_action(
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'admin_notices',
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function () use ( $queued ) {
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echo '<div class="notice notice-success is-dismissible"><p>' . esc_html(
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sprintf(
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__( '%d peptides queued for re-enrichment.', 'peptide-search-ai' ),
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$queued
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)
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) . '</p></div>';
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}
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);
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}
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}
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@@ -117,12 +130,14 @@ class PSA_Admin {
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* Idempotent — safe to run multiple times.
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*/
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private static function run_category_migration(): void {
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$posts = get_posts( array(
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'post_type' => 'peptide',
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'post_status' => array( 'publish', 'draft' ),
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'posts_per_page' => -1,
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'fields' => 'ids',
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) );
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$posts = get_posts(
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array(
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'post_type' => 'peptide',
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'post_status' => array( 'publish', 'draft' ),
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'posts_per_page' => -1,
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'fields' => 'ids',
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)
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);
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foreach ( $posts as $post_id ) {
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$terms = wp_get_object_terms( $post_id, 'peptide_category' );
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@@ -199,17 +214,25 @@ class PSA_Admin {
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* @return int Number of peptides queued.
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*/
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private static function queue_reenrichment(): int {
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$posts = get_posts( array(
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'post_type' => 'peptide',
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'post_status' => 'publish',
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'posts_per_page' => -1,
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'fields' => 'ids',
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'meta_query' => array(
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'relation' => 'OR',
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array( 'key' => 'psa_half_life', 'compare' => 'NOT EXISTS' ),
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array( 'key' => 'psa_half_life', 'value' => '' ),
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),
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) );
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$posts = get_posts(
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array(
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'post_type' => 'peptide',
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'post_status' => 'publish',
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'posts_per_page' => -1,
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'fields' => 'ids',
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'meta_query' => array(
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'relation' => 'OR',
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array(
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'key' => 'psa_half_life',
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'compare' => 'NOT EXISTS',
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),
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array(
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'key' => 'psa_half_life',
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'value' => '',
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),
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),
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)
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);
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$daily_key = 'psa_daily_gen_' . gmdate( 'Y-m-d' );
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$daily_count = (int) get_transient( $daily_key );
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@@ -226,7 +249,12 @@ class PSA_Admin {
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}
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update_post_meta( $post_id, 'psa_source', 'pending' );
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wp_update_post( array( 'ID' => $post_id, 'post_status' => 'draft' ) );
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wp_update_post(
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array(
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'ID' => $post_id,
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'post_status' => 'draft',
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)
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);
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update_post_meta( $post_id, 'psa_generation_started', time() );
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$args = array( $post_id, $post->post_title );
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@@ -234,7 +262,7 @@ class PSA_Admin {
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// Stagger 30s apart to avoid rate-limit hammering.
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wp_schedule_single_event( time() + ( $queued * 30 ), 'psa_generate_peptide_background', $args );
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}
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$queued++;
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++$queued;
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}
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set_transient( $daily_key, $daily_count + $queued, DAY_IN_SECONDS );
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@@ -262,29 +290,38 @@ class PSA_Admin {
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// ── Backward-compatible proxies (rendering moved to PSA_Admin_Page) ─
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/** @see PSA_Admin_Page::enqueue_batch_scripts() */
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public static function enqueue_batch_scripts( string $hook ): void { PSA_Admin_Page::enqueue_batch_scripts( $hook ); }
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public static function enqueue_batch_scripts( string $hook ): void {
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PSA_Admin_Page::enqueue_batch_scripts( $hook ); }
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/** @see PSA_Admin_Page::render_section_description() */
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public static function render_section_description(): void { PSA_Admin_Page::render_section_description(); }
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public static function render_section_description(): void {
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PSA_Admin_Page::render_section_description(); }
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/** @see PSA_Admin_Page::render_api_key_field() */
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public static function render_api_key_field(): void { PSA_Admin_Page::render_api_key_field(); }
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public static function render_api_key_field(): void {
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PSA_Admin_Page::render_api_key_field(); }
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/** @see PSA_Admin_Page::render_model_field() */
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public static function render_model_field(): void { PSA_Admin_Page::render_model_field(); }
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public static function render_model_field(): void {
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PSA_Admin_Page::render_model_field(); }
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/** @see PSA_Admin_Page::render_validation_model_field() */
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public static function render_validation_model_field(): void { PSA_Admin_Page::render_validation_model_field(); }
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public static function render_validation_model_field(): void {
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PSA_Admin_Page::render_validation_model_field(); }
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/** @see PSA_Admin_Page::render_publish_field() */
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public static function render_publish_field(): void { PSA_Admin_Page::render_publish_field(); }
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public static function render_publish_field(): void {
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PSA_Admin_Page::render_publish_field(); }
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/** @see PSA_Admin_Page::render_pubchem_field() */
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public static function render_pubchem_field(): void { PSA_Admin_Page::render_pubchem_field(); }
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public static function render_pubchem_field(): void {
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PSA_Admin_Page::render_pubchem_field(); }
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/** @see PSA_Admin_Page::render_budget_field() */
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public static function render_budget_field(): void { PSA_Admin_Page::render_budget_field(); }
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public static function render_budget_field(): void {
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PSA_Admin_Page::render_budget_field(); }
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/** @see PSA_Admin_Page::render_settings_page() */
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public static function render_settings_page(): void { PSA_Admin_Page::render_settings_page(); }
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public static function render_settings_page(): void {
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PSA_Admin_Page::render_settings_page(); }
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}
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