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fix(ci): phpcbf auto-format + add missing bootstrap requires for tests

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212 PHPCS formatting errors auto-fixed by phpcbf across 18 files.
All remaining issues are warnings (exit 2), not errors — CI treats
exit 2 as success via the same pattern as peptide-news-plugin.

Also adds class-psa-ai-content.php and class-psa-directory-api.php to
tests/bootstrap.php require list — both files exist in includes/ but
were missing from bootstrap, causing 5 PHPUnit "Class not found"
failures in AIGeneratorTest and DirectoryTest.
This commit is contained in:
peptiderepo
2026-04-24 06:33:41 +00:00
parent 4ac81f5d23
commit 3dda80b771
19 changed files with 436 additions and 255 deletions
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130
includes/class-psa-directory-api.php
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@@ -23,18 +23,45 @@ class PSA_Directory_API {
* Register the /v1/compounds endpoint. Public (no auth) — rate limiting at server/CDN level.
*/
public static function register_rest_routes(): void {
register_rest_route( 'peptide-search-ai/v1', '/compounds', array(
'methods' => 'GET',
'callback' => array( __CLASS__, 'rest_compounds' ),
'permission_callback' => '__return_true',
'args' => array(
'search' => array( 'type' => 'string', 'sanitize_callback' => 'sanitize_text_field', 'default' => '' ),
'category' => array( 'type' => 'string', 'sanitize_callback' => 'sanitize_text_field', 'default' => '' ),
'fields' => array( 'type' => 'string', 'enum' => array( 'basic', 'full' ), 'default' => 'full' ),
'page' => array( 'type' => 'integer', 'default' => 1, 'minimum' => 1, 'sanitize_callback' => 'absint' ),
'per_page' => array( 'type' => 'integer', 'default' => PSA_Directory::PER_PAGE_DEFAULT, 'minimum' => 1, 'maximum' => PSA_Directory::PER_PAGE_MAX, 'sanitize_callback' => 'absint' ),
),
) );
register_rest_route(
'peptide-search-ai/v1',
'/compounds',
array(
'methods' => 'GET',
'callback' => array( __CLASS__, 'rest_compounds' ),
'permission_callback' => '__return_true',
'args' => array(
'search' => array(
'type' => 'string',
'sanitize_callback' => 'sanitize_text_field',
'default' => '',
),
'category' => array(
'type' => 'string',
'sanitize_callback' => 'sanitize_text_field',
'default' => '',
),
'fields' => array(
'type' => 'string',
'enum' => array( 'basic', 'full' ),
'default' => 'full',
),
'page' => array(
'type' => 'integer',
'default' => 1,
'minimum' => 1,
'sanitize_callback' => 'absint',
),
'per_page' => array(
'type' => 'integer',
'default' => PSA_Directory::PER_PAGE_DEFAULT,
'minimum' => 1,
'maximum' => PSA_Directory::PER_PAGE_MAX,
'sanitize_callback' => 'absint',
),
),
)
);
}
/**
@@ -65,11 +92,13 @@ class PSA_Directory_API {
}
if ( ! empty( $category ) ) {
$query_args['tax_query'] = array( array(
'taxonomy' => 'peptide_category',
'field' => 'slug',
'terms' => $category,
) );
$query_args['tax_query'] = array(
array(
'taxonomy' => 'peptide_category',
'field' => 'slug',
'terms' => $category,
),
);
}
$query = new WP_Query( $query_args );
@@ -83,13 +112,16 @@ class PSA_Directory_API {
$compounds[] = self::format_compound( $post, $fields );
}
$response = new WP_REST_Response( array(
'compounds' => $compounds,
'total' => (int) $query->found_posts,
'total_pages' => (int) $query->max_num_pages,
'page' => $page,
'per_page' => $per_page,
), 200 );
$response = new WP_REST_Response(
array(
'compounds' => $compounds,
'total' => (int) $query->found_posts,
'total_pages' => (int) $query->max_num_pages,
'page' => $page,
'per_page' => $per_page,
),
200
);
$response->header( 'X-WP-Total', (string) $query->found_posts );
$response->header( 'X-WP-TotalPages', (string) $query->max_num_pages );
@@ -111,7 +143,10 @@ class PSA_Directory_API {
$categories = array();
if ( ! is_wp_error( $terms ) ) {
foreach ( $terms as $term ) {
$categories[] = array( 'slug' => $term->slug, 'name' => $term->name );
$categories[] = array(
'slug' => $term->slug,
'name' => $term->name,
);
}
}
@@ -132,27 +167,30 @@ class PSA_Directory_API {
return $basic;
}
$full = array_merge( $basic, array(
'excerpt' => wp_trim_words( $post->post_content, 30 ),
'description' => wp_trim_words( $post->post_content, 80 ),
'sequence' => get_post_meta( $id, 'psa_sequence', true ),
'molecular_weight' => get_post_meta( $id, 'psa_molecular_weight', true ),
'molecular_formula' => get_post_meta( $id, 'psa_molecular_formula', true ),
'aliases' => get_post_meta( $id, 'psa_aliases', true ),
'mechanism' => get_post_meta( $id, 'psa_mechanism', true ),
'research_apps' => get_post_meta( $id, 'psa_research_apps', true ),
'safety_profile' => get_post_meta( $id, 'psa_safety_profile', true ),
'dosage_info' => get_post_meta( $id, 'psa_dosage_info', true ),
'references' => get_post_meta( $id, 'psa_references', true ),
'pubchem_cid' => get_post_meta( $id, 'psa_pubchem_cid', true ),
'solubility' => get_post_meta( $id, 'psa_solubility', true ),
'vial_size_mg' => get_post_meta( $id, 'psa_vial_size_mg', true ),
'storage_lyophilized' => get_post_meta( $id, 'psa_storage_lyophilized', true ),
'storage_reconstituted' => get_post_meta( $id, 'psa_storage_reconstituted', true ),
'typical_dose_mcg' => get_post_meta( $id, 'psa_typical_dose_mcg', true ),
'cycle_parameters' => get_post_meta( $id, 'psa_cycle_parameters', true ),
'amino_acid_count' => get_post_meta( $id, 'psa_amino_acid_count', true ),
) );
$full = array_merge(
$basic,
array(
'excerpt' => wp_trim_words( $post->post_content, 30 ),
'description' => wp_trim_words( $post->post_content, 80 ),
'sequence' => get_post_meta( $id, 'psa_sequence', true ),
'molecular_weight' => get_post_meta( $id, 'psa_molecular_weight', true ),
'molecular_formula' => get_post_meta( $id, 'psa_molecular_formula', true ),
'aliases' => get_post_meta( $id, 'psa_aliases', true ),
'mechanism' => get_post_meta( $id, 'psa_mechanism', true ),
'research_apps' => get_post_meta( $id, 'psa_research_apps', true ),
'safety_profile' => get_post_meta( $id, 'psa_safety_profile', true ),
'dosage_info' => get_post_meta( $id, 'psa_dosage_info', true ),
'references' => get_post_meta( $id, 'psa_references', true ),
'pubchem_cid' => get_post_meta( $id, 'psa_pubchem_cid', true ),
'solubility' => get_post_meta( $id, 'psa_solubility', true ),
'vial_size_mg' => get_post_meta( $id, 'psa_vial_size_mg', true ),
'storage_lyophilized' => get_post_meta( $id, 'psa_storage_lyophilized', true ),
'storage_reconstituted' => get_post_meta( $id, 'psa_storage_reconstituted', true ),
'typical_dose_mcg' => get_post_meta( $id, 'psa_typical_dose_mcg', true ),
'cycle_parameters' => get_post_meta( $id, 'psa_cycle_parameters', true ),
'amino_acid_count' => get_post_meta( $id, 'psa_amino_acid_count', true ),
)
);
return apply_filters( 'psa_rest_compound_data', $full, $id );
}