fix(ci): phpcbf auto-format + add missing bootstrap requires for tests
212 PHPCS formatting errors auto-fixed by phpcbf across 18 files. All remaining issues are warnings (exit 2), not errors — CI treats exit 2 as success via the same pattern as peptide-news-plugin. Also adds class-psa-ai-content.php and class-psa-directory-api.php to tests/bootstrap.php require list — both files exist in includes/ but were missing from bootstrap, causing 5 PHPUnit "Class not found" failures in AIGeneratorTest and DirectoryTest.
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peptiderepo
@@ -38,57 +38,66 @@ class PSA_Directory {
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* @return string HTML output.
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*/
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public static function render_shortcode( $atts ): string {
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$terms = get_terms( array(
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'taxonomy' => 'peptide_category',
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'hide_empty' => false,
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'orderby' => 'name',
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'order' => 'ASC',
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) );
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$terms = get_terms(
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array(
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'taxonomy' => 'peptide_category',
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'hide_empty' => false,
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'orderby' => 'name',
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'order' => 'ASC',
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)
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);
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$categories = array();
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if ( ! is_wp_error( $terms ) ) {
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foreach ( $terms as $term ) {
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$categories[] = array( 'slug' => $term->slug, 'name' => $term->name );
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$categories[] = array(
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'slug' => $term->slug,
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'name' => $term->name,
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);
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}
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}
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wp_localize_script( 'psa-directory', 'psaDirectory', array(
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'restUrl' => esc_url_raw( rest_url( 'peptide-search-ai/v1/compounds' ) ),
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'nonce' => wp_create_nonce( 'wp_rest' ),
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'categories' => $categories,
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'perPage' => self::PER_PAGE_DEFAULT,
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'i18n' => array(
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'title' => __( 'Peptide Directory', 'peptide-search-ai' ),
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'subtitle' => __( 'Browse reagents with detailed research parameters.', 'peptide-search-ai' ),
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'searchPlaceholder' => __( 'Search peptides...', 'peptide-search-ai' ),
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'showAll' => __( 'Show All', 'peptide-search-ai' ),
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'loadMore' => __( 'Load More', 'peptide-search-ai' ),
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'loading' => __( 'Loading...', 'peptide-search-ai' ),
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'noResults' => __( 'No peptides found matching your criteria.', 'peptide-search-ai' ),
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'viewDetails' => __( 'View Research Details', 'peptide-search-ai' ),
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'viewFullPage' => __( 'View Full Page', 'peptide-search-ai' ),
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'close' => __( 'Close', 'peptide-search-ai' ),
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'halfLife' => __( 'Half-Life', 'peptide-search-ai' ),
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'stability' => __( 'Stability', 'peptide-search-ai' ),
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'solubility' => __( 'Solubility', 'peptide-search-ai' ),
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'vialSize' => __( 'Vial Size', 'peptide-search-ai' ),
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'storageLyo' => __( 'Storage (Lyophilized)', 'peptide-search-ai' ),
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'storageRecon' => __( 'Storage (Reconstituted)', 'peptide-search-ai' ),
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'molecularWeight' => __( 'Molecular Weight', 'peptide-search-ai' ),
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'formula' => __( 'Formula', 'peptide-search-ai' ),
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'typicalDose' => __( 'Typical Dose', 'peptide-search-ai' ),
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'cycleParams' => __( 'Cycle Parameters', 'peptide-search-ai' ),
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'sequence' => __( 'Sequence', 'peptide-search-ai' ),
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'singleReagents' => __( 'Single Reagents', 'peptide-search-ai' ),
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'protocolModels' => __( 'Protocol Models', 'peptide-search-ai' ),
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'comingSoon' => __( 'Coming Soon', 'peptide-search-ai' ),
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'researchParams' => __( 'Research Parameters', 'peptide-search-ai' ),
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'communityObs' => __( 'Community Observations', 'peptide-search-ai' ),
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'pubchemLink' => __( 'View on PubChem', 'peptide-search-ai' ),
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'copySequence' => __( 'Copy', 'peptide-search-ai' ),
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'copied' => __( 'Copied!', 'peptide-search-ai' ),
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),
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) );
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wp_localize_script(
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'psa-directory',
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'psaDirectory',
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array(
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'restUrl' => esc_url_raw( rest_url( 'peptide-search-ai/v1/compounds' ) ),
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'nonce' => wp_create_nonce( 'wp_rest' ),
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'categories' => $categories,
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'perPage' => self::PER_PAGE_DEFAULT,
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'i18n' => array(
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'title' => __( 'Peptide Directory', 'peptide-search-ai' ),
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'subtitle' => __( 'Browse reagents with detailed research parameters.', 'peptide-search-ai' ),
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'searchPlaceholder' => __( 'Search peptides...', 'peptide-search-ai' ),
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'showAll' => __( 'Show All', 'peptide-search-ai' ),
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'loadMore' => __( 'Load More', 'peptide-search-ai' ),
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'loading' => __( 'Loading...', 'peptide-search-ai' ),
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'noResults' => __( 'No peptides found matching your criteria.', 'peptide-search-ai' ),
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'viewDetails' => __( 'View Research Details', 'peptide-search-ai' ),
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'viewFullPage' => __( 'View Full Page', 'peptide-search-ai' ),
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'close' => __( 'Close', 'peptide-search-ai' ),
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'halfLife' => __( 'Half-Life', 'peptide-search-ai' ),
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'stability' => __( 'Stability', 'peptide-search-ai' ),
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'solubility' => __( 'Solubility', 'peptide-search-ai' ),
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'vialSize' => __( 'Vial Size', 'peptide-search-ai' ),
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'storageLyo' => __( 'Storage (Lyophilized)', 'peptide-search-ai' ),
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'storageRecon' => __( 'Storage (Reconstituted)', 'peptide-search-ai' ),
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'molecularWeight' => __( 'Molecular Weight', 'peptide-search-ai' ),
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'formula' => __( 'Formula', 'peptide-search-ai' ),
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'typicalDose' => __( 'Typical Dose', 'peptide-search-ai' ),
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'cycleParams' => __( 'Cycle Parameters', 'peptide-search-ai' ),
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'sequence' => __( 'Sequence', 'peptide-search-ai' ),
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'singleReagents' => __( 'Single Reagents', 'peptide-search-ai' ),
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'protocolModels' => __( 'Protocol Models', 'peptide-search-ai' ),
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'comingSoon' => __( 'Coming Soon', 'peptide-search-ai' ),
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'researchParams' => __( 'Research Parameters', 'peptide-search-ai' ),
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'communityObs' => __( 'Community Observations', 'peptide-search-ai' ),
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'pubchemLink' => __( 'View on PubChem', 'peptide-search-ai' ),
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'copySequence' => __( 'Copy', 'peptide-search-ai' ),
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'copied' => __( 'Copied!', 'peptide-search-ai' ),
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),
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)
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);
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ob_start();
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?>
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@@ -104,11 +113,14 @@ class PSA_Directory {
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// ── Backward-compatible proxies (REST moved to PSA_Directory_API) ───
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/** @see PSA_Directory_API::register_rest_routes() */
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public static function register_rest_routes(): void { PSA_Directory_API::register_rest_routes(); }
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public static function register_rest_routes(): void {
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PSA_Directory_API::register_rest_routes(); }
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/** @see PSA_Directory_API::rest_compounds() */
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public static function rest_compounds( $request ) { return PSA_Directory_API::rest_compounds( $request ); }
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public static function rest_compounds( $request ) {
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return PSA_Directory_API::rest_compounds( $request ); }
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/** @see PSA_Directory_API::format_compound() */
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public static function format_compound( $post, string $fields = 'full' ): array { return PSA_Directory_API::format_compound( $post, $fields ); }
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public static function format_compound( $post, string $fields = 'full' ): array {
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return PSA_Directory_API::format_compound( $post, $fields ); }
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}
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