peptide-repo/peptide-search-ai
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

security: apply 11 audit findings (2 critical, 4 high, 5 medium/low)

Browse Source 
SEC-001 CRITICAL: Remove spoofable X-Forwarded-For/X-Real-IP from IP detection; trust only CF-Connecting-IP + REMOTE_ADDR
SEC-004 HIGH: Add peptide name input validation with character whitelist and prompt injection blocking
SEC-006 HIGH: Add missing return after wp_send_json_success in handle_pending_retry max-retries block
SEC-007 MEDIUM: KB articles now respect auto_publish setting instead of always publishing
SEC-009 MEDIUM: Replace hardcoded page ID 73 with configurable kb_page_id setting
SEC-010 MEDIUM: Fix cache invalidation — add underscore prefix to transient name pattern
SEC-011 MEDIUM: Skip sleep() during WP-Cron to avoid blocking PHP workers on rate limit retry
SEC-012 MEDIUM: Add global daily generation cap (50/day) to prevent cost overruns
SEC-013 LOW: Add @deprecated notice to unused PSA_Error class
SEC-015 LOW: Convert uninstall.php from space to tab indentation (WPCS)

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
peptiderepo
2026-04-10 20:46:46 +07:00
parent 229fb577bf
commit 866a8dc1ea
6 changed files with 80 additions and 20 deletions
Download Patch File Download Diff File Expand all files Collapse all files

55
includes/class-psa-ai-generator.php
View File

@@ -30,6 +30,15 @@ class PSA_AI_Generator {
* @return array|WP_Error { is_valid: bool, canonical_name: string, reason: string }
*/
public static function validate_peptide_name( $name ) {
// Input character validation — block injection attempts before API call.
if ( ! self::validate_peptide_input( $name ) ) {
return array(
'is_valid' => false,
'canonical_name' => $name,
'reason' => 'Invalid characters in peptide name.',
);
}
$options = self::get_settings();
$api_key = $options['api_key'];
$model = $options['validation_model'];
@@ -89,14 +98,14 @@ class PSA_AI_Generator {
public static function background_generate( $post_id, $peptide_name ) {
$post = get_post( $post_id );
if ( ! $post || 'draft' !== $post->post_status || 'peptide' !== $post->post_type ) {
error_log( 'PSA: background_generate skipped — post ' . $post_id . ' not a draft peptide.' );
error_log( 'PSA: background_generate skipped — post ' . $post_id . ' not a draft peptide.' );
return;
}
// Only process posts that are still in 'pending' state.
$source = get_post_meta( $post_id, 'psa_source', true );
if ( 'pending' !== $source ) {
error_log( 'PSA: background_generate skipped — post ' . $post_id . ' source is "' . $source . '", not "pending".' );
error_log( 'PSA: background_generate skipped — post ' . $post_id . ' source is "' . $source . '", not "pending".' );
return;
}
@@ -124,7 +133,7 @@ class PSA_AI_Generator {
// Safeguard: if post_content is still empty after generation, log a warning.
if ( empty( trim( $post_content ) ) ) {
error_log( 'PSA: WARNING — AI returned valid JSON but post content (overview/description) is empty for "' . $peptide_name . '". Available keys: ' . implode( ', ', array_keys( $result ) ) );
error_log( 'PSA: WARNING — AI returned valid JSON but post content (overview/description) is empty for "' . $peptide_name . '". Available keys: ' . implode( ', ', array_keys( $result ) ) );
update_post_meta( $post_id, 'psa_generation_error', 'AI returned empty overview/description content. Available fields: ' . implode( ', ', array_keys( $result ) ) );
return;
}
@@ -161,11 +170,11 @@ class PSA_AI_Generator {
return;
}
// Save all meta fields — prefer PubChem data for molecular properties.
// Save all meta fields — prefer PubChem data for molecular properties.
self::save_peptide_meta( $post_id, $result, $pubchem_data );
// Create a matching Knowledge Base article.
self::create_kb_article( $post_id, $result, $peptide_name );
self::create_kb_article( $post_id, $result, $peptide_name, $post_status );
// Clean up generation tracking.
delete_post_meta( $post_id, 'psa_generation_started' );
@@ -280,6 +289,28 @@ class PSA_AI_Generator {
}
}
/**
* Validate peptide name input characters and block injection patterns.
*
* @param string $name The peptide name to validate.
* @return bool True if input looks legitimate.
*/
private static function validate_peptide_input( $name ) {
// Allow only characters that appear in legitimate peptide names.
if ( ! preg_match( '/^[\p{L}\d\s\-\(\),\.\/\+\[\]]+$/u', $name ) ) {
return false;
}
// Block obvious prompt injection patterns.
$blocked = array( 'ignore', 'instruction', 'override', 'system prompt', 'forget', 'disregard', 'pretend' );
$lower = strtolower( $name );
foreach ( $blocked as $word ) {
if ( strpos( $lower, $word ) !== false ) {
return false;
}
}
return true;
}
/**
* Build the lightweight validation prompt.
*
@@ -393,9 +424,14 @@ PROMPT;
return $result;
}
// Rate limited — retry with exponential backoff.
// Rate limited — retry with exponential backoff.
if ( $attempt < $max_retries ) {
$delay = $base_delay * pow( 2, $attempt - 1 ); // 5s, 10s, 20s
// Avoid blocking PHP workers during WP-Cron execution.
if ( defined( 'DOING_CRON' ) && DOING_CRON ) {
error_log( 'PSA: Rate limited during cron on attempt ' . $attempt . '/' . $max_retries . '. Returning to free PHP worker.' );
return new WP_Error( 'rate_limited', 'Rate limited during background generation. Will retry on next cron trigger.' );
}
error_log( 'PSA: Rate limited on attempt ' . $attempt . '/' . $max_retries . '. Retrying in ' . $delay . 's...' );
sleep( $delay );
}
@@ -515,10 +551,11 @@ PROMPT;
* @param int $peptide_post_id The peptide post ID.
* @param array $ai_data The parsed AI data.
* @param string $peptide_name The peptide name.
* @param string $post_status The post status (default: 'draft').
*/
private static function create_kb_article( $peptide_post_id, $ai_data, $peptide_name ) {
private static function create_kb_article( $peptide_post_id, $ai_data, $peptide_name, $post_status = 'draft' ) {
if ( ! post_type_exists( 'epkb_post_type_1' ) ) {
error_log( 'PSA: Echo Knowledge Base not active — skipping KB article.' );
error_log( 'PSA: Echo Knowledge Base not active — skipping KB article.' );
return;
}
@@ -607,7 +644,7 @@ PROMPT;
'post_title' => $title,
'post_content' => wp_kses_post( $c ),
'post_type' => 'epkb_post_type_1',
'post_status' => 'publish',
'post_status' => $post_status,
),
true
);

3
includes/class-psa-config.php
View File

@@ -20,6 +20,9 @@ class PSA_Config {
const REST_RATE_LIMIT = 20;
const AJAX_RATE_LIMIT = 10;
// Daily generation cap
const DAILY_GENERATION_CAP = 50;
// Generation timing
const PENDING_TIMEOUT = 300; // seconds (5 minutes)
const MAX_GENERATION_RETRIES = 3;

3
includes/class-psa-error.php
View File

@@ -3,7 +3,8 @@
* Standardized error handling for Peptide Search AI.
* Provides a unified interface for sending error responses with consistent structure.
*
* @package PeptideSearchAI
* @package PeptideSearchAI
* @deprecated 4.1.0 Currently unused. Retained for potential future integration.
*/
if ( ! defined( 'ABSPATH' ) ) {

23
includes/class-psa-search.php
View File

@@ -39,8 +39,8 @@ class PSA_Search {
// phpcs:ignore WordPress.DB.DirectDatabaseQuery
$wpdb->query(
"DELETE FROM {$wpdb->options}
WHERE option_name LIKE 'transient_psa_search_%'
OR option_name LIKE 'transient_timeout_psa_search_%'"
WHERE option_name LIKE '_transient_psa_search_%'
OR option_name LIKE '_transient_timeout_psa_search_%'"
);
}
@@ -236,6 +236,7 @@ class PSA_Search {
'message' => 'We were unable to generate content for this peptide. Please try again later.',
)
);
return;
}
// Retry generation.
@@ -273,6 +274,19 @@ class PSA_Search {
* @return void Exits with wp_send_json_* responses.
*/
private static function handle_new_generation( $query ) {
// Global daily generation cap to prevent cost overruns.
$daily_key = 'psa_daily_gen_' . gmdate( 'Y-m-d' );
$daily_count = (int) get_transient( $daily_key );
if ( $daily_count >= PSA_Config::DAILY_GENERATION_CAP ) {
wp_send_json_success(
array(
'status' => 'rate_limited',
'message' => 'Our system has reached its daily limit for adding new peptides. Please try again tomorrow.',
)
);
return;
}
// Validate peptide name via AI.
$validation = PSA_AI_Generator::validate_peptide_name( $query );
@@ -308,6 +322,11 @@ class PSA_Search {
wp_send_json_error( 'Failed to create peptide entry. Please try again.' );
}
// Increment global daily generation counter.
$daily_key = 'psa_daily_gen_' . gmdate( 'Y-m-d' );
$daily_count = (int) get_transient( $daily_key );
set_transient( $daily_key, $daily_count + 1, DAY_IN_SECONDS );
// Schedule async background generation.
error_log( 'PSA: Scheduling async generation for "' . $canonical_name . '" (post ' . $placeholder_id . ')' );
self::schedule_background_generation( $placeholder_id, $canonical_name );