212 PHPCS formatting errors auto-fixed by phpcbf across 18 files.
All remaining issues are warnings (exit 2), not errors — CI treats
exit 2 as success via the same pattern as peptide-news-plugin.
Also adds class-psa-ai-content.php and class-psa-directory-api.php to
tests/bootstrap.php require list — both files exist in includes/ but
were missing from bootstrap, causing 5 PHPUnit "Class not found"
failures in AIGeneratorTest and DirectoryTest.
Closes three P1 findings from the QA baseline review of a8a0ce2:
- uninstall.php deletes psa_db_version
- PSA_Upgrade class with unit tests (is_needed is pure, maybe_run is the driver)
- ARCHITECTURE.md documents the schema-versioning mechanism
Also extracts the logic into includes/class-psa-upgrade.php so it is cleanly testable without bootstrapping the whole plugin file.
Agent-Session: cowork-qa-p1-fixes-20260414
Adds [peptide_directory] shortcode with card grid, category taxonomy (8 terms),
search, pagination, detail modal, and /v1/compounds REST endpoint. Includes 9
new meta fields (half-life, stability, solubility, etc.), admin data tools for
migration/re-enrichment, integration hooks for cross-plugin extensibility,
dark mode support, and full uninstall cleanup. Refactors AI generator into
PSA_OpenRouter + PSA_KB_Builder classes. Adds PHPUnit tests for PostType and
Directory classes. Fixes QA findings: dead JS selector, renderError loading
state, numeric meta validation, prepared SQL in uninstall.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
