v1.5.0: extend theme with navigation dropdowns, 9 page templates, auth UI, newsletter, contact panel

Major theme extension adding full-featured navigation with dropdown submenus (Tools, My Data, Resources),
9 new page templates (Calculator, Protocol Builder, Tracker, Subject Log, Documentation, Directory,
Science Feed, Profile, Sign In/Register), documentation page with sidebar ToC and scroll spy,
branded AJAX authentication forms, newsletter signup with admin export, slide-out contact/support panel,
Research Modules 6-card grid on front page, and comprehensive footer update.

Split functions.php (554→206 lines) into 6 focused inc/ modules: helpers, customizer, auth-handlers,
contact-handler, page-setup, newsletter-admin. All new components include dark mode support, CSRF
protection, input sanitization, output escaping, and graceful plugin degradation via shortcode_exists().

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
peptiderepo
2026-04-14 08:38:30 +07:00
parent 6c7faa6eed
commit 9da702e746
31 changed files with 4311 additions and 1085 deletions

186
inc/helpers.php Normal file
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<?php
/**
* Theme Helper Functions
*
* Customizer output helpers, nav walker, custom logo, pagination,
* and other utility functions shared across the theme.
*
* @see functions.php — includes this file
* @see header.php — uses peptide_starter_the_custom_logo()
* @see front-page.php — uses hero getters
*
* What: Utility functions for template output and theme mods.
* Who calls it: Various templates and functions.php.
* Dependencies: WordPress Customizer API, Walker_Nav_Menu.
*
* @package peptide-starter
*/
// Exit if accessed directly.
if ( ! defined( 'ABSPATH' ) ) {
exit;
}
/**
* Navigation Menu Walker for handling active states.
*
* Adds an 'active' class to current menu items and their parents
* for CSS styling via the .primary-navigation a.active selector.
*/
class Peptide_Starter_Nav_Walker extends Walker_Nav_Menu {
/**
* Render a single menu item.
*
* @param string $output Item output.
* @param WP_Post $item Menu item data.
* @param int $depth Depth of menu item.
* @param stdClass $args Menu arguments.
* @param int $id Current item ID.
* @return void
*/
public function start_el( &$output, $item, $depth = 0, $args = null, $id = 0 ) {
$indent = ( $depth ) ? str_repeat( "\t", $depth ) : '';
$classes = empty( $item->classes ) ? array() : (array) $item->classes;
$classes[] = 'menu-item-' . $item->ID;
if ( in_array( 'current-menu-item', $classes, true ) || in_array( 'current-menu-parent', $classes, true ) ) {
$classes[] = 'active';
}
$args = apply_filters( 'nav_menu_item_args', $args, $item, $depth );
$class_names = join( ' ', apply_filters( 'nav_menu_css_class', array_filter( $classes ), $item, $args, $depth ) );
$class_names = $class_names ? ' class="' . esc_attr( $class_names ) . '"' : '';
$item_id = apply_filters( 'nav_menu_item_id', 'menu-item-' . $item->ID, $item, $args, $depth );
$item_id = $item_id ? ' id="' . esc_attr( $item_id ) . '"' : '';
$output .= $indent . '<li' . $item_id . $class_names . '>';
$atts = array(
'title' => ! empty( $item->attr_title ) ? $item->attr_title : '',
'target' => ! empty( $item->target ) ? $item->target : '',
'rel' => ! empty( $item->xfn ) ? $item->xfn : '',
'href' => ! empty( $item->url ) ? $item->url : '',
);
$atts = apply_filters( 'nav_menu_link_attributes', $atts, $item, $args, $depth );
$attributes = '';
foreach ( $atts as $attr => $value ) {
if ( ! empty( $value ) ) {
$value = ( 'href' === $attr ) ? esc_url( $value ) : esc_attr( $value );
$attributes .= ' ' . $attr . '="' . $value . '"';
}
}
$title = apply_filters( 'the_title', $item->title, $item->ID );
$link = $args->before;
$link .= '<a' . $attributes . '>';
$link .= $args->link_before . $title . $args->link_after;
$link .= '</a>';
$link .= $args->after;
$output .= $link . "</li>\n";
}
}
/**
* Display custom logo with fallback to site name.
*
* @return void
*/
function peptide_starter_the_custom_logo() {
if ( function_exists( 'the_custom_logo' ) ) {
the_custom_logo();
} else {
$site_name = get_bloginfo( 'name' );
echo '<a class="site-logo" href="' . esc_url( home_url( '/' ) ) . '" rel="home">' . esc_html( $site_name ) . '</a>';
}
}
/**
* Get hero title from Customizer.
*
* @return string Hero title text.
*/
function peptide_starter_get_hero_title() {
return get_theme_mod( 'hero_title', get_bloginfo( 'name' ) );
}
/**
* Get hero subtitle from Customizer.
*
* @return string Hero subtitle text.
*/
function peptide_starter_get_hero_subtitle() {
return get_theme_mod( 'hero_subtitle', esc_html__( 'A scientific peptide reference database', 'peptide-starter' ) );
}
/**
* Get search placeholder from Customizer.
*
* @return string Search placeholder text.
*/
function peptide_starter_get_search_placeholder() {
return get_theme_mod( 'hero_search_placeholder', esc_html__( 'Search peptides, sequences, or research...', 'peptide-starter' ) );
}
/**
* Get footer copyright text from Customizer.
*
* @return string Copyright text (may contain safe HTML).
*/
function peptide_starter_get_footer_copyright() {
return get_theme_mod( 'footer_copyright', esc_html__( 'Copyright © 2026 Peptide Repo. All rights reserved.', 'peptide-starter' ) );
}
/**
* Check if newsletter form should display.
*
* @return bool Whether to show the newsletter form.
*/
function peptide_starter_show_newsletter_form() {
return apply_filters( 'peptide_starter_show_newsletter', true );
}
/**
* Render pagination links for archive pages.
*
* @return void
*/
function peptide_starter_pagination() {
global $wp_query;
if ( $wp_query->max_num_pages <= 1 ) {
return;
}
$current = max( 1, get_query_var( 'paged' ) );
$total = $wp_query->max_num_pages;
echo '<nav class="ps-pagination">';
echo paginate_links(
array(
'base' => get_pagenum_link( 1 ) . '%_%',
'format' => 'page/%#%/',
'current' => $current,
'total' => $total,
'prev_text' => esc_html__( '← Previous', 'peptide-starter' ),
'next_text' => esc_html__( 'Next →', 'peptide-starter' ),
'type' => 'plain',
)
);
echo '</nav>';
}
/**
* Check if a specific plugin is active by its main file path.
*
* @param string $plugin Plugin file path relative to plugins directory.
* @return bool Whether the plugin is active.
*/
function peptide_starter_is_plugin_active( $plugin ) {
return in_array( $plugin, (array) get_option( 'active_plugins', array() ), true );
}