Adds the org-wide agent process doc (QA gate, peptiderepo git identity,
300-line cap, doc-in-same-commit, branch naming, commit trailer, PR-only
to main) and rewrites CLAUDE.md as a thin bootstrap pointer to it.
No runtime impact. No code change. Pure process/docs ratification.
Per CTO handoff in convo/prtheme/threads/2026-04-v1.5.2-release-cleanup/
03-cto-reply.md, this is the calibration run for the rollout pattern
across the four peptiderepo repos.
Agent-Session: prtheme/v1.5.2-release-cleanup/claude-opus-4-6
Major theme extension adding full-featured navigation with dropdown submenus (Tools, My Data, Resources),
9 new page templates (Calculator, Protocol Builder, Tracker, Subject Log, Documentation, Directory,
Science Feed, Profile, Sign In/Register), documentation page with sidebar ToC and scroll spy,
branded AJAX authentication forms, newsletter signup with admin export, slide-out contact/support panel,
Research Modules 6-card grid on front page, and comprehensive footer update.
Split functions.php (554→206 lines) into 6 focused inc/ modules: helpers, customizer, auth-handlers,
contact-handler, page-setup, newsletter-admin. All new components include dark mode support, CSRF
protection, input sanitization, output escaping, and graceful plugin degradation via shortcode_exists().
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
