28 Commits

Author SHA1 Message Date
peptiderepo
a751a8f890 Adopt reusable CI standard + helpers split (#61) 2026-06-16 21:36:06 +07:00
peptiderepo
844951b268 feat(front-page): remove Science Feed card + 3-item news teaser (v2.2.2)
Merges PR #55. Science Feed removed from module grid (5 cards). Inline news feed replaced with 3-item teaser + CTA. Version 2.2.1 → 2.2.2.
2026-04-29 14:35:03 +07:00
peptiderepo
2b23bb7e2a feat: RCT inline abbreviation tooltip on verdict legend strip (v2.2.1) (#53)
CI green (PHP Lint 8.1/8.2/8.3 ✓, PHPCS ✓, PHPUnit 8.1/8.2/8.3 ✓). QA: PASS.
2026-04-29 13:29:04 +07:00
peptiderepo
bdc3ace6cf fix: mobile verdict explainer grid responsive layout (v2.2.0)
- Remove double horizontal padding from .hero-verdict-explainer section
  (ps-container inside already provides 24px padding on each side)
- Switch base grid to single column; add 520px breakpoint for 2-col
  (below 520px, columns are too narrow for 'Investigational' pill)
- Add min-width: 0 to grid items to prevent implicit size blowout
- Add max-width: 100% to .pr-verdict inside items as overflow guard
- Sync style.css with production state (server had drifted from v2.1.8 HEAD)

Fixes: right-column cards misaligned/clipped on narrow mobile viewports
2026-04-29 06:10:28 +00:00
peptiderepo
6f85210950 fix: add missing CSS for homepage verdict sections (v2.1.8)
hero-featured-verdicts, hero-verdict-card, and hero-verdict-explainer
classes were used in front-page.php but had no CSS rules, causing the
Featured Verdicts section to render with bare browser defaults.

- Add grid layout for verdict cards (1-col mobile, 3-col >=900px)
- Add card styling: border, padding, radius, shadow, hover lift
- Tint left border per verdict state via CSS :has()
- Add verdict explainer grid (2-col mobile, 3-col 640px, 5-col 900px)
- Add signal rows, summary, link, and footer button styling
2026-04-28 09:56:06 +00:00
peptiderepo
4fa63e43cc feat(newsletter): Beehiiv signup integration — theme v2.1.7
- Add page-subscribe.php: single-column conversion template for /subscribe/
- Add peptide-newsletter-cta block to single-peptide.php (compact Beehiiv
  iframe at 180px height after article content, before prev/next nav)
- Add peptide_starter_enqueue_beehiiv_attribution() to functions.php:
  loads attribution.js site-wide in footer (one include covers all placements)
- Add 'Get our weekly digest →' footer CTA in column 1 linking to /subscribe/
  (styled accent-green; sits below brand blurb)

Form ID: 6edcd482-cbea-4767-8777-97ac17d6d609
Attribution tracking: https://subscribe-forms.beehiiv.com/attribution.js
2026-04-27 15:18:21 +00:00
peptiderepo
fb09e50c02 feat(content): Our Methodology page template + footer link (v2.1.6)
- Add page-our-methodology.php — two-column ToC template for /our-methodology/
  Mirrors page-how-we-review.php; CSS classes use page-our-methodology prefix
  #last-verified anchor is deep-link target for Phase 2 verdict-card lines
- Footer section 5: add Our Methodology link between How We Review + Editorial Standards
- Bump version to 2.1.6
2026-04-27 08:32:24 +00:00
peptiderepo
dbc3c01bc4 fix(css): featured verdicts vertical-rhythm — tighten badge→title, widen inter-card gap (v2.1.5)
Issue 1: badge→title gap tightened from 16px to 8px.
  Verdict badge is a label for the peptide name; card's uniform gap: --spacing-md
  made them look like separate paragraphs. Fix: margin-top offset on __title.

Issue 2: inter-card gap increased from --spacing-xl (32px) to --spacing-2xl (48px).
  Cards were visually merging into a single block. Card-to-card gap must clearly
  exceed within-card gaps to maintain the three-card hierarchy.

No functional or template changes — CSS-only.
2026-04-27 01:46:12 +00:00
peptiderepo
fdaea84d72 feat: B2 coming-soon badges on inactive tool cards (v2.1.4)
- Add 'coming_soon' key to module card definitions
- Protocol Builder, Tracker, Subject Log: coming_soon = true
- Calculator: fully active (shortcode_exists passes); no badge, no --inactive
- New .ps-module-card__badge: absolute top-right pill, --gray-200/--gray-700,
  Inter 600 10px; layers on top of --inactive dim treatment
- position: relative added to .ps-module-card to anchor the badge

CMO-approved in thread: 2026-04-site-wide-brand-adoption seq 10
2026-04-26 09:49:32 +00:00
peptiderepo
22716b4227 fix: calc shortcode name mismatch — prc_calculator not peptide_tools_calculator (v2.1.3)
page-calculator.php and module-cards.php were both checking for
'peptide_tools_calculator' which the plugin never registered.
The calc plugin (prc) registers 'prc_calculator' — template fell
through to the 'currently being set up' fallback on every request.
2026-04-26 09:06:03 +00:00
peptiderepo
03bedf1d6b feat(copy): homepage editorial voice — v2.1.2
Items 2, 3, 5 from CMO QA pass (seq 4):
- module-cards: H2 'Research Modules' → 'Tools'; subtitle + all 6 card
  descriptions rewritten in editorial voice (removed reagent/laboratory framing)
- footer: About blurb → verdict-driven guide framing
- front-page: news section H2 'Latest Peptide Research' → 'What\'s new';
  subtitle updated to match editorial voice
  (CMO seq 2 reversed 'Briefing' to avoid vocabulary collision with newsletter)

Version: 2.1.1 → 2.1.2
2026-04-26 06:25:47 +00:00
peptiderepo
27d9cc5831 fix: cookie notice brand alignment + bump v2.1.1
Yoast homepage title/meta: updated via WP-CLI on production (no code change):
  title:   'Peptide Repo — What the research really says'
  desc:    'Verdict-driven peptide guides for clinicians and informed readers.
            20 monographs across 5 verdict states...'
  (CMO QA feedback, seq 2, item 1)

style.css — Cookie Notice (Hu-manity.co) button override:
  #cn-accept-cookie, #cn-more-info: background !important → var(--teal-500)
  hover state → var(--teal-600)
  Reason: plugin renders inline style='background-color: #00a99d' which beats
  regular CSS selectors; !important is the correct override mechanism here.
  (CMO QA feedback, seq 2, item 4)

Version: 2.1.0-alpha.3 → 2.1.1
2026-04-26 04:59:55 +00:00
peptiderepo
4188bba014 v2.1.0 — Brand token adoption + homepage verdict sections
- Remap --color-brand-primary/--color-link-hover/--focus-shadow → teal tokens
- Hero search submit → lime-500/ink (CMO brief §6)
- Hero decorative shapes → teal/lime tints
- Hero wavy underline → teal
- front-page.php: verdict taxonomy explainer (5 states) + featured verdict cards
- inc/helpers.php: new brand copy defaults (hero title + subtitle)
2026-04-26 04:22:04 +00:00
peptiderepo
7b5f992a2a fix: CMO walkthrough P1 fixes — verdict_text, per-row glyphs, conditional disclosure, dark mode (v2.0.0-alpha.3)
P1.1: verdict_text meta field + card.php wiring
- Register verdict_text (textarea, show_in_rest) on peptide CPT
- card.php reads verdict_text meta; falls back to placeholder if empty
- Hardcoded generic placeholder no longer the default for published posts
- All 3 monographs populated with CMO-authored verdict text

P1.2: per-row glyph meta fields
- Register signal_row_1/2/3_glyph (enum: ✓|!|?|⊘|⚠, show_in_rest)
- card.php reads per-row glyph from meta instead of hardcoding by position
- Missing glyph renders nothing (not a wrong glyph)
- Semaglutide: ✓✓! | BPC-157: ✓!? | Melanotan-II: !!⚠

P1.3: conditional inline disclosure
- Register has_partner_link (boolean, default false, show_in_rest)
- single-peptide.php only renders inline disclosure when has_partner_link=true
- All 3 loaded monographs set to has_partner_link=false
- Footer disclosure unaffected (always renders)

N.1: dark mode toggle hidden
- header.php: toggle button hidden (display:none + aria-hidden)
- Dark-mode verdict colors not validated for v1; re-enable in v1.1

Meta box updated with textarea, glyph dropdowns, and partner-link checkbox.
2026-04-26 02:12:35 +00:00
peptiderepo
ce08425270 fix: wire verdict card and disclosure into single-peptide.php (v2.0.0-alpha.2)
- Verdict card component was built in alpha.1 but never called from the
  template; no verdict state was rendering on any pr_peptide page.
  Now called immediately after the page header for posts with verdict_state.
- Affiliate disclosure (inline) was built in alpha.1 but never called.
  Now rendered after .peptide-content-box (below the_content / partner links)
  per the editorial disclosure spec: disclosure must follow the partner link.
- Suppress page-header <h1> when verdict_state is set; the verdict card
  already renders an <h1>, avoiding duplicate heading semantics / SEO issue.
2026-04-25 20:28:14 +00:00
peptiderepo
e23c141009 feat: brand identity v1.0.0 — Direction C Trusted Guide (theme v2.0.0-alpha.1)
Implements weeks 1–4 of the CMO brand identity sprint.

Key changes:
- CSS token system (assets/css/brand.css): full palette, verdict tokens, component styles
- Poppins/Inter/IBM Plex Mono Google Fonts loading with preload
- Full favicon/PWA/OG asset pack (peptide-repo-brand v1.0.0)
- 5-state verdict badge + card + evidence row components
- verdict_state + signal_row post meta on pr_peptide CPT
- Homepage hero: teal bg, new H1/subhead, lime search bar
- Archive verdict filter chips (CSS + pre_get_posts query hook)
- Affiliate disclosure component (3 contexts)
- page-how-we-review.php + page-about.php templates
- Footer Our Method links
- a11y: skip-to-content, reduced-motion, aria on verdict badges

QA: PASS (0 blockers) — qa-reviews/peptide-starter-theme/2026-04-26-a2bff59.md
Staging verified: https://staging.peptiderepo.com
2026-04-26 02:59:00 +07:00
peptiderepo
e40602d58c chore: remove dead Elementor CSS remnant from style.css (v1.7.1) 2026-04-24 02:21:04 +07:00
peptiderepo
59363e3795 fix: bump style.css version to 1.7.0 (missed in WooCommerce removal PR) 2026-04-24 02:17:57 +07:00
peptiderepo
d79fc94061 feat(perf): mobile performance Phase 1 — dequeue unused plugin assets + slim fonts + preconnect (#13)
Ships peptide-starter-theme v1.6.0.

Changes:
- New inc/perf-asset-policy.php module: conditional dequeue of WC/Elementor/USMI assets on pages that do not need them, Google Fonts weight slim (Roboto 100..900 → 400/500/700; Roboto Slab → 400/700), wp_resource_hints preconnect for fonts.googleapis.com + fonts.gstatic.com, cookie-notice-front script defer.
- Kill-switch constant PEPTIDE_STARTER_PERF_DEQUEUE (default true) for instant rollback via wp-config.php.
- 4 extensibility filters: peptide_starter_perf_woocommerce_{styles,scripts}, _elementor_{styles,scripts}, _usmi_{styles,scripts}, _font_weights.
- 13 unit tests in tests/test-perf-asset-policy.php.
- Bootstrap: 2 lines in functions.php (require + after_setup_theme action).
- Docs: CHANGELOG [1.6.0], ARCHITECTURE.md, CONVENTIONS.md how-to.

Target: mobile PSI 74 → 90+, LCP 5.4s → ~2.5s.

Post-deploy: purge LiteSpeed CSS bundle.

QA: qa-reviews/peptide-starter-theme/2026-04-23-a54b5c9.md (APPROVE with handle-drift verified false-positive).
2026-04-23 13:24:47 +07:00
peptiderepo
d2577b8371 fix: display featured images at full width, centered
The theme was rendering featured images at WordPress 'medium' size
(300×300 square crop) instead of the full 1200×632 original. Changed
the_post_thumbnail() from 'medium' to 'full' and added responsive CSS
that scales images to 100% content width with centered alignment.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-19 13:18:05 +07:00
peptiderepo
fff3fce432 v1.5.2: CF-peer validated client IP, grandfather migration, de-short-circuit register
Security follow-up to v1.5.1. Closes four items from the v1.5.1 review —
two ship-blockers and two mediums — all within the ADR-0001 envelope.

PSEC-007 — peptide_starter_get_client_ip() now trusts CF-Connecting-IP
only when REMOTE_ADDR falls inside a published Cloudflare edge range.
Previously, any direct-to-origin request (which Hostinger permits) could
forge its rate-limit key by setting the header to a different IP per
attempt, bypassing every abuse control in the theme. New module
inc/cloudflare-ips.php embeds a dated snapshot of CF v4/v6 ranges and a
CIDR matcher covering both families; list is overridable via the
peptide_starter_cloudflare_ip_ranges filter for out-of-band updates.
HTTP_X_FORWARDED_FOR stays ignored unless operators opt in via the
peptide_starter_trust_xff filter.

PSEC-008 — Removed the v1.5.1 user-verification migration (Option A as
confirmed by peptiderepo). The sync-wp_mail-per-subscriber loop on
admin_init would have blocked wp-admin and hammered deliverability.
Existing accounts are now grandfathered: no ps_pending_verification
meta = verified. Verification applies only to registrations from v1.5.2
forward. The ps_verify_migration_version option (written by v1.5.1) is
cleared on theme activation.

PSEC-009 — Registration validation no longer short-circuits. All five
checks (username pattern, email validity, password length,
username_exists, email_exists) evaluate unconditionally before the
combined rejection. Closes the response-time oracle that let an
attacker distinguish microsecond-fast regex rejection from DB-round-trip
rejection and infer which field triggered the failure.

PSEC-010 — Added the happy-path verify test that v1.5.1 was missing.
Covers token match, user meta cleanup, auth cookie set, and the
peptide_starter_user_verified action firing with the correct user ID.

Seven new rate-limiter tests confirm CF-peer validation works
end-to-end: trusted CF peer honours the header, untrusted peer ignores
spoofed headers, invalid values fall through, XFF default-off, XFF
filter opt-in, CF range filter override, IPv6 CIDR match, family
mismatch rejection.

Confirmed with peptiderepo before coding: (1) Option A for PSEC-008
because zero users; (2) Cloudflare IS in front of the origin (dig
confirms 104.21.x / 172.67.x + CF-Ray response header), so PSEC-007 is
a real fix not dead code; (3) no staging — treat prod as staging.

ARCHITECTURE.md gains a client-IP trust model section; CONVENTIONS.md
documents the header-trust rules for future modules.

Version bumped to 1.5.2 in style.css and functions.php.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-14 15:39:09 +07:00
peptiderepo
cb8b73f4ab v1.5.1: frontend auth hardening — rate limiting, email verification, honeypots, CSV safety
Security-only release per ADR-0001. Closes all six ship-blockers from the
post-v1.5.0 audit: PSEC-001 (no rate limiting), PSEC-002 (account
enumeration via separate error messages), PSEC-003 (registration auto-login
with no email verification), PSEC-004 (ungated "My Data" templates),
PSEC-005 (CSV formula injection on subscriber export), PSEC-006 (no
honeypot/CAPTCHA on public forms).

Adds inc/config.php (single source of truth for all security thresholds,
filterable via peptide_starter_security_config), inc/rate-limiter.php
(Peptide_Starter_Rate_Limiter + Cloudflare-aware client IP resolver,
transient-backed, never stores raw IPs), and inc/email-verification.php
(43-char token, 24h TTL, /verify rewrite, rate-limited resend endpoint).

Auth handlers rewritten to: unify all failure messages, rate-limit before
any expensive check, drop registrations with a filled honeypot silently,
stop auto-login on register, send a verification email instead. The
require_login() helper lives in inc/helpers.php and is applied at the top
of page-tracker.php, page-subject-log.php, and page-protocol-builder.php;
page-calculator.php stays open (no PII, no writes).

Newsletter signup gains: consent checkbox, privacy link, honeypot,
autoload=false on the wp_options blob, unsubscribe token stored per row,
/newsletter-unsubscribe route, merged success+duplicate into a single "ok"
state. Admin export runs every cell through peptide_starter_csv_safe()
which prefixes leading =/+/-/@/tab/CR with a quote.

Contact handler hardens against email-header injection (rejects name
values with \r \n , < >), rate-limits, honors honeypot, tags mail
failures with a request ID for correlation without logging message
content.

Adds Tools → Mail Test (inc/mail-diagnostic.php): a permanent wp_mail
probe so we can check Hostinger outbound deliverability any time it looks
flaky. Adds a one-time admin_init migration that enrols pre-v1.5.1
subscribers into the verification flow (currently a no-op — zero users —
but guarded for the future).

Other cleanup from the audit: fallback primary menu moved out of
header.php into inc/helpers.php (redeclaration risk), placeholder footer
language links replaced with "Translations coming soon", footer copyright
now reads through the customizer getter, settings-panel gains a proper
Tab/Shift+Tab focus trap and saves/restores body overflow, documentation
heading IDs slugified from heading text with collision counters, JS files
standardized on const/let.

Six new PHPUnit suites cover rate limiter lifecycle, auth handler error
unification and rate limits, email verification token generation and
expiry, contact handler header injection + rate limit + honeypot,
newsletter signup consent + CSV safety, and require_login gate behavior.

ARCHITECTURE.md and CONVENTIONS.md updated in the same commit — new
module layout, data flows, security patterns for rate-limiting,
honeypotting, gating, and CSV-safe export.

Version bumped to 1.5.1 in style.css and functions.php.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-14 13:01:22 +07:00
peptiderepo
9da702e746 v1.5.0: extend theme with navigation dropdowns, 9 page templates, auth UI, newsletter, contact panel
Major theme extension adding full-featured navigation with dropdown submenus (Tools, My Data, Resources),
9 new page templates (Calculator, Protocol Builder, Tracker, Subject Log, Documentation, Directory,
Science Feed, Profile, Sign In/Register), documentation page with sidebar ToC and scroll spy,
branded AJAX authentication forms, newsletter signup with admin export, slide-out contact/support panel,
Research Modules 6-card grid on front page, and comprehensive footer update.

Split functions.php (554→206 lines) into 6 focused inc/ modules: helpers, customizer, auth-handlers,
contact-handler, page-setup, newsletter-admin. All new components include dark mode support, CSRF
protection, input sanitization, output escaping, and graceful plugin degradation via shortcode_exists().

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-14 08:38:30 +07:00
peptiderepo
6c7faa6eed v1.4.1: bump version to bust CSS cache after spacing fix
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-13 11:59:57 +07:00
peptiderepo
349eeb6377 fix: tighten spacing across hero, archive, and news sections
Reduce hero padding from 96/80px to 64/48px, shrink subtitle and
search margins, tighten news-feed and archive section padding,
and reduce peptides grid gap for better content density.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-13 11:57:22 +07:00
peptiderepo
f41a4d8fed v1.4.0: Clawdiverse-inspired theme redesign
Warm off-white light palette, decorative geometric shapes,
category-coded peptide cards with tinted borders and pill badges,
larger hero typography with accent word, header CTA button,
and redesigned single-peptide detail page with meta card grid.

Dark mode stays default per user preference. Light mode gets the
warm treatment when toggled or via prefers-color-scheme.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-13 11:34:35 +07:00
peptiderepo
7226a08719 v1.3.2: security hardening, CI linting, test scaffold
- Add nonce + CSRF verification to newsletter form (footer.php)
- Add sanitize_callback to all 5 Customizer settings
- Add PHPCS (WordPress-Core) and JS syntax checks to CI pipeline
- Safeguard rsync --delete with dev-file excludes
- Scaffold PHPUnit tests (bootstrap, helpers, theme setup)
- Add composer.json, .phpcs.xml.dist, phpunit.xml
- Bump version to 1.3.2
- Update ARCHITECTURE.md and CHANGELOG.md

Addresses CTO audit findings: security (A- → A), testing (F → D+), CI/CD (C → B).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-12 22:49:06 +07:00
peptiderepo
9642066846 Initial commit: peptide-starter theme v1.3.1 2026-04-08 01:30:16 +07:00