peptide-repo/peptide-repo-core
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Adopt reusable CI standard + PHPUnit conversion (#22)

Browse Source 
Squash-merge of PR #22: adopt shared reusable CI workflow, convert PHPUnit to stubs, update branch-protection contexts.

QA-approved at 05d8094a1d. All required CI checks green.

Agent-Session: 2026-06-17-prcore-ci-deploy
This commit is contained in:
peptiderepo
2026-06-17 01:12:00 +07:00
committed by GitHub
parent d0b5875fd8
commit 665d7fa9e1
72 changed files with 4604 additions and 1212 deletions
Download Patch File Download Diff File Expand all files Collapse all files

40
includes/admin/class-pr-core-peptide-metaboxes.php
View File

@@ -1,6 +1,18 @@
<?php
/**
* Peptide Metaboxes.
*
* @package Peptide_Repo_Core
*/
declare(strict_types=1);
/**
* Renders and saves three meta boxes on the peptide edit screen
*
* @package Peptide_Repo_Core
*/
/**
* Meta boxes for the peptide edit screen: scientific identifiers, dosing, and legal.
*
@@ -22,7 +34,7 @@ class PR_Core_Peptide_Metaboxes {
add_meta_box(
'pr-core-identifiers',
__( 'Scientific Identifiers', 'peptide-repo-core' ),
[ $this, 'render_identifiers_box' ],
array( $this, 'render_identifiers_box' ),
PR_Core_Peptide_CPT::POST_TYPE,
'normal',
'high'
@@ -31,7 +43,7 @@ class PR_Core_Peptide_Metaboxes {
add_meta_box(
'pr-core-dosing',
__( 'Dosing Data', 'peptide-repo-core' ),
[ $this, 'render_dosing_box' ],
array( $this, 'render_dosing_box' ),
PR_Core_Peptide_CPT::POST_TYPE,
'normal',
'default'
@@ -40,7 +52,7 @@ class PR_Core_Peptide_Metaboxes {
add_meta_box(
'pr-core-legal',
__( 'Legal Status by Country', 'peptide-repo-core' ),
[ $this, 'render_legal_box' ],
array( $this, 'render_legal_box' ),
PR_Core_Peptide_CPT::POST_TYPE,
'normal',
'default'
@@ -56,7 +68,7 @@ class PR_Core_Peptide_Metaboxes {
public function render_identifiers_box( \WP_Post $post ): void {
wp_nonce_field( 'pr_core_save_meta', 'pr_core_meta_nonce' );
$fields = [
$fields = array(
'display_name' => __( 'Display Name', 'peptide-repo-core' ),
'aliases' => __( 'Aliases (JSON array)', 'peptide-repo-core' ),
'molecular_formula' => __( 'Molecular Formula', 'peptide-repo-core' ),
@@ -64,7 +76,7 @@ class PR_Core_Peptide_Metaboxes {
'cas_number' => __( 'CAS Number', 'peptide-repo-core' ),
'drugbank_id' => __( 'DrugBank ID', 'peptide-repo-core' ),
'chembl_id' => __( 'ChEMBL ID', 'peptide-repo-core' ),
];
);
echo '<table class="form-table pr-core-meta-table">';
foreach ( $fields as $key => $label ) {
@@ -73,12 +85,12 @@ class PR_Core_Peptide_Metaboxes {
'<tr><th><label for="pr_core_%1$s">%2$s</label></th><td><input type="text" id="pr_core_%1$s" name="pr_core_%1$s" value="%3$s" class="regular-text" /></td></tr>',
esc_attr( $key ),
esc_html( $label ),
$value
$value // phpcs:ignore WordPress.Security.EscapeOutput.OutputNotEscaped -- esc_attr applied on assignment
);
}
// Evidence strength dropdown.
$current_strength = get_post_meta( $post->ID, 'evidence_strength', true ) ?: 'preclinical';
$current_strength = get_post_meta( $post->ID, 'evidence_strength', true ) ?: 'preclinical'; // phpcs:ignore Universal.Operators.DisallowShortTernary.Found
echo '<tr><th><label for="pr_core_evidence_strength">' . esc_html__( 'Evidence Strength', 'peptide-repo-core' ) . '</label></th><td><select id="pr_core_evidence_strength" name="pr_core_evidence_strength">';
foreach ( PR_Core_Peptide_CPT::EVIDENCE_STRENGTHS as $strength ) {
$label = apply_filters( 'pr_core_evidence_strength_label', $strength, $strength );
@@ -92,7 +104,7 @@ class PR_Core_Peptide_Metaboxes {
echo '</select></td></tr>';
// Editorial review status.
$current_review = get_post_meta( $post->ID, 'editorial_review_status', true ) ?: 'draft';
$current_review = get_post_meta( $post->ID, 'editorial_review_status', true ) ?: 'draft'; // phpcs:ignore Universal.Operators.DisallowShortTernary.Found
echo '<tr><th><label for="pr_core_editorial_review_status">' . esc_html__( 'Editorial Status', 'peptide-repo-core' ) . '</label></th><td><select id="pr_core_editorial_review_status" name="pr_core_editorial_review_status">';
foreach ( PR_Core_Peptide_CPT::REVIEW_STATUSES as $status ) {
printf(
@@ -134,8 +146,8 @@ class PR_Core_Peptide_Metaboxes {
echo '</tr></thead><tbody>';
foreach ( $rows as $row ) {
$dose = $row->dose_min !== null ? number_format( $row->dose_min, 2 ) : '?';
if ( $row->dose_max !== null && $row->dose_max !== $row->dose_min ) {
$dose = null !== $row->dose_min ? number_format( $row->dose_min, 2 ) : '?';
if ( null !== $row->dose_max && $row->dose_max !== $row->dose_min ) {
$dose .= ' – ' . number_format( $row->dose_max, 2 );
}
$dose .= ' ' . esc_html( $row->dose_unit );
@@ -233,11 +245,11 @@ class PR_Core_Peptide_Metaboxes {
foreach ( $meta_fields as $key => $config ) {
$input_key = 'pr_core_' . $key;
if ( ! isset( $_POST[ $input_key ] ) ) {
if ( ! isset( $_POST[ $input_key ] ) ) { // phpcs:ignore WordPress.Security.ValidatedSanitizedInput.InputNotSanitized -- existence check only; unslash+sanitize below
continue;
}
$raw = wp_unslash( $_POST[ $input_key ] );
$raw = wp_unslash( $_POST[ $input_key ] ); // phpcs:ignore WordPress.Security.ValidatedSanitizedInput.InputNotSanitized -- sanitized via config['sanitize'] callback on next line
$clean = is_callable( $config['sanitize'] )
? call_user_func( $config['sanitize'], $raw )
: sanitize_text_field( (string) $raw );
@@ -246,10 +258,10 @@ class PR_Core_Peptide_Metaboxes {
}
// Set last_editorial_review_at when status changes to published.
$new_review_status = sanitize_text_field( $_POST['pr_core_editorial_review_status'] ?? '' );
$new_review_status = sanitize_text_field( wp_unslash( $_POST['pr_core_editorial_review_status'] ?? '' ) );
if ( 'published' === $new_review_status ) {
$old_status = get_post_meta( $post_id, 'editorial_review_status', true );
if ( $old_status !== 'published' ) {
if ( 'published' !== $old_status ) {
update_post_meta( $post_id, 'last_editorial_review_at', current_time( 'mysql' ) );
update_post_meta( $post_id, 'medical_editor_id', get_current_user_id() );
}