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Adopt reusable CI standard + PHPUnit conversion (#22)

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Squash-merge of PR #22: adopt shared reusable CI workflow, convert PHPUnit to stubs, update branch-protection contexts.

QA-approved at 05d8094a1d. All required CI checks green.

Agent-Session: 2026-06-17-prcore-ci-deploy
This commit is contained in:
peptiderepo
2026-06-17 01:12:00 +07:00
committed by GitHub
parent d0b5875fd8
commit 665d7fa9e1
72 changed files with 4604 additions and 1212 deletions
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68
includes/class-pr-core.php
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@@ -1,6 +1,18 @@
<?php
/**
* Class Pr Core.
*
* @package Peptide_Repo_Core
*/
declare(strict_types=1);
/**
* Registers all hooks, runs migrations, boots subsystems
*
* @package Peptide_Repo_Core
*/
/**
* Main orchestrator for the Peptide Repo Core plugin.
*
@@ -43,28 +55,28 @@ class PR_Core {
$repo_daily_tax = new PR_Core_Repo_Daily_Taxonomy();
$repo_daily_tax->register_hooks();
// One-shot rewrite flush on in-place version bumps. Runs at the very
// end of init (priority 999) so all CPTs/taxonomies — ours and
// anyone else's — are registered first. Handles updates deployed
// One-shot rewrite flush on in-place version bumps. Runs at the very.
// end of init (priority 999) so all CPTs/taxonomies — ours and.
// anyone else's — are registered first. Handles updates deployed.
// without a deactivate/reactivate cycle (e.g., SCP/rsync pushes).
add_action( 'init', [ PR_Core_Activator::class, 'maybe_flush_on_version_change' ], 999 );
add_action( 'init', array( PR_Core_Activator::class, 'maybe_flush_on_version_change' ), 999 );
// Verification scanner: register cron hook and schedule if not already scheduled.
if ( ! wp_next_scheduled( 'pr_core_verification_scan' ) ) {
wp_schedule_event( time(), get_option( 'pr_core_scan_cadence', 'weekly' ), 'pr_core_verification_scan' );
}
add_action( 'pr_core_verification_scan', [ PR_Core_Verification_Scanner::class, 'run_scan' ] );
add_action( 'pr_core_verification_scan', array( PR_Core_Verification_Scanner::class, 'run_scan' ) );
// Ajax handlers must be registered outside is_admin() — admin-ajax.php
// Ajax handlers must be registered outside is_admin() — admin-ajax.php.
// does not define WP_ADMIN, so is_admin() returns false for ajax requests.
add_action( 'wp_ajax_pr_core_mark_verified', [ PR_Core_Ajax_Handlers::class, 'handle_mark_verified' ] );
add_action( 'wp_ajax_pr_core_scan_now', [ PR_Core_Ajax_Handlers::class, 'handle_scan_now' ] );
add_action( 'wp_ajax_pr_core_mark_verified', array( PR_Core_Ajax_Handlers::class, 'handle_mark_verified' ) );
add_action( 'wp_ajax_pr_core_scan_now', array( PR_Core_Ajax_Handlers::class, 'handle_scan_now' ) );
// Admin UI (fires on admin_init, admin_menu).
if ( is_admin() ) {
add_action( 'admin_menu', [ PR_Core_Settings::class, 'add_settings_page' ] );
add_action( 'admin_init', [ PR_Core_Settings::class, 'register_settings' ] );
add_action( 'wp_dashboard_setup', [ PR_Core_Verification_Widget::class, 'register' ] );
add_action( 'admin_menu', array( PR_Core_Settings::class, 'add_settings_page' ) );
add_action( 'admin_init', array( PR_Core_Settings::class, 'register_settings' ) );
add_action( 'wp_dashboard_setup', array( PR_Core_Verification_Widget::class, 'register' ) );
$admin = new PR_Core_Admin();
$admin->register_hooks();
@@ -86,7 +98,7 @@ class PR_Core {
$related_posts->register_hooks();
// Enqueue related-posts CSS on single peptide pages.
add_action( 'wp_enqueue_scripts', [ $this, 'enqueue_frontend_styles' ] );
add_action( 'wp_enqueue_scripts', array( $this, 'enqueue_frontend_styles' ) );
// REST API.
$rest = new PR_Core_Rest_Controller();
@@ -109,7 +121,7 @@ class PR_Core {
wp_enqueue_style(
'pr-core-related-posts',
PR_CORE_PLUGIN_URL . 'assets/css/related-posts.css',
[],
array(),
PR_CORE_VERSION
);
}
@@ -125,9 +137,9 @@ class PR_Core {
* @return void
*/
private function register_public_filters(): void {
add_filter( 'pr_core_get_indexable_corpus', [ $this, 'filter_indexable_corpus' ] );
add_filter( 'pr_core_disclaimer_for_surface', [ $this, 'filter_disclaimer_for_surface' ], 10, 2 );
add_filter( 'pr_core_evidence_strength_label', [ $this, 'filter_evidence_label' ], 10, 2 );
add_filter( 'pr_core_get_indexable_corpus', array( $this, 'filter_indexable_corpus' ) );
add_filter( 'pr_core_disclaimer_for_surface', array( $this, 'filter_disclaimer_for_surface' ), 10, 2 );
add_filter( 'pr_core_evidence_strength_label', array( $this, 'filter_evidence_label' ), 10, 2 );
}
/**
@@ -139,17 +151,17 @@ class PR_Core {
* @return array<int, array<string, mixed>>
*/
public function filter_indexable_corpus( array $entries ): array {
$repo = new PR_Core_Peptide_Repository();
$peptides = $repo->find_all( [ 'status' => 'publish' ] );
$repo = new PR_Core_Peptide_Repository();
$peptides = $repo->find_all( array( 'status' => 'publish' ) );
foreach ( $peptides as $dto ) {
$entries[] = [
$entries[] = array(
'id' => $dto->id,
'url' => get_permalink( $dto->id ),
'title' => $dto->title,
'body' => $dto->excerpt . "\n" . $dto->content,
'type' => 'peptide_monograph',
];
);
}
return $entries;
@@ -174,14 +186,14 @@ class PR_Core {
* @return string Localized label.
*/
public function filter_evidence_label( string $label, string $strength ): string {
$map = [
'preclinical' => __( 'Preclinical', 'peptide-repo-core' ),
'case-series' => __( 'Case Series', 'peptide-repo-core' ),
'observational' => __( 'Observational', 'peptide-repo-core' ),
'rct-small' => __( 'Small RCT', 'peptide-repo-core' ),
'rct-large' => __( 'Large RCT', 'peptide-repo-core' ),
'meta-analysis' => __( 'Meta-Analysis', 'peptide-repo-core' ),
];
$map = array(
'preclinical' => __( 'Preclinical', 'peptide-repo-core' ),
'case-series' => __( 'Case Series', 'peptide-repo-core' ),
'observational' => __( 'Observational', 'peptide-repo-core' ),
'rct-small' => __( 'Small RCT', 'peptide-repo-core' ),
'rct-large' => __( 'Large RCT', 'peptide-repo-core' ),
'meta-analysis' => __( 'Meta-Analysis', 'peptide-repo-core' ),
);
return $map[ $strength ] ?? $strength;
}