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Adopt reusable CI standard + PHPUnit conversion (#22)

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Squash-merge of PR #22: adopt shared reusable CI workflow, convert PHPUnit to stubs, update branch-protection contexts.

QA-approved at 05d8094a1d. All required CI checks green.

Agent-Session: 2026-06-17-prcore-ci-deploy
This commit is contained in:
peptiderepo
2026-06-17 01:12:00 +07:00
committed by GitHub
parent d0b5875fd8
commit 665d7fa9e1
72 changed files with 4604 additions and 1212 deletions
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60
includes/frontend/class-pr-core-jsonld-drug.php
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@@ -1,6 +1,18 @@
<?php
/**
* Jsonld Drug.
*
* @package Peptide_Repo_Core
*/
declare(strict_types=1);
/**
* Assembles a Drug (+ MolecularEntity) schema node from peptide DTO
*
* @package Peptide_Repo_Core
*/
/**
* Builds the schema.org Drug graph piece for a peptide page.
*
@@ -17,17 +29,33 @@ declare(strict_types=1);
*/
class PR_Core_Jsonld_Drug {
/** @var string Meta key: molecular formula sourced by migration 0004. */
private const META_FORMULA = '_pr_molecular_formula';
/**
* Meta key: molecular formula sourced by migration 0004.
*
* @var string Meta key: molecular formula sourced by migration 0004.
*/
private const META_FORMULA = '_pr_molecular_formula';
/** @var string Meta key: molecular weight (float string) sourced by migration 0004. */
private const META_WEIGHT = '_pr_molecular_weight';
/**
* Meta key: molecular weight (float string) sourced by migration 0004.
*
* @var string Meta key: molecular weight (float string) sourced by migration 0004.
*/
private const META_WEIGHT = '_pr_molecular_weight';
/** @var string Meta key: aliases JSON array sourced by migration 0004. */
private const META_ALIASES = '_pr_aliases';
/**
* Meta key: aliases JSON array sourced by migration 0004.
*
* @var string Meta key: aliases JSON array sourced by migration 0004.
*/
private const META_ALIASES = '_pr_aliases';
/** @var string Unit text for molecularWeight QuantitativeValue. */
private const UNIT_TEXT = 'g/mol';
/**
* Unit text for molecularWeight QuantitativeValue.
*
* @var string Unit text for molecularWeight QuantitativeValue.
*/
private const UNIT_TEXT = 'g/mol';
/**
* Build a schema.org Drug piece array for a peptide.
@@ -38,12 +66,12 @@ class PR_Core_Jsonld_Drug {
public function build( PR_Core_Peptide_DTO $peptide ): array {
$permalink = get_permalink( $peptide->id );
$node = [
'@type' => [ 'Drug', 'MolecularEntity' ],
$node = array(
'@type' => array( 'Drug', 'MolecularEntity' ),
'@id' => $permalink . '#drug',
'name' => $peptide->display_name ?: $peptide->title,
'name' => $peptide->display_name ?: $peptide->title, // phpcs:ignore Universal.Operators.DisallowShortTernary.Found
'url' => $permalink,
];
);
if ( '' !== $peptide->excerpt ) {
$node['description'] = $peptide->excerpt;
@@ -64,11 +92,11 @@ class PR_Core_Jsonld_Drug {
// molecularWeight: prefer _pr_molecular_weight, fall back to DTO field.
$weight = $this->get_weight( $peptide );
if ( $weight > 0.0 ) {
$node['molecularWeight'] = [
$node['molecularWeight'] = array(
'@type' => 'QuantitativeValue',
'value' => $weight,
'unitText' => self::UNIT_TEXT,
];
);
}
// External identifiers: CAS and DrugBank omitted in v0.6.0 (no source).
@@ -150,9 +178,9 @@ class PR_Core_Jsonld_Drug {
* @return array<string, string>|null
*/
private function build_legal_status(): ?array {
return [
return array(
'@type' => 'DrugLegalStatus',
'description' => esc_html__( 'Not approved for human therapeutic use; supplied for laboratory research purposes only.', 'peptide-repo-core' ),
];
);
}
}