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Adopt reusable CI standard + PHPUnit conversion (#22)

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Squash-merge of PR #22: adopt shared reusable CI workflow, convert PHPUnit to stubs, update branch-protection contexts.

QA-approved at 05d8094a1d. All required CI checks green.

Agent-Session: 2026-06-17-prcore-ci-deploy
This commit is contained in:
peptiderepo
2026-06-17 01:12:00 +07:00
committed by GitHub
parent d0b5875fd8
commit 665d7fa9e1
72 changed files with 4604 additions and 1212 deletions
Download Patch File Download Diff File Expand all files Collapse all files

45
includes/scanner/class-pr-core-verification-scanner.php
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@@ -1,6 +1,18 @@
<?php
/**
* Verification Scanner.
*
* @package Peptide_Repo_Core
*/
declare(strict_types=1);
/**
* Runs periodic scans of all published peptides, computes verification status
*
* @package Peptide_Repo_Core
*/
/**
* Verification scanner for peptide monographs.
*
@@ -28,15 +40,15 @@ class PR_Core_Verification_Scanner {
* @return void
*/
public static function run_scan(): void {
$repo = new PR_Core_Peptide_Repository();
$peptides = $repo->find_all( [ 'status' => 'publish' ] );
$repo = new PR_Core_Peptide_Repository();
$peptides = $repo->find_all( array( 'status' => 'publish' ) );
$due_peptides = [];
$overdue_peptides = [];
$due_peptides = array();
$overdue_peptides = array();
foreach ( $peptides as $dto ) {
$last_verified = get_post_meta( $dto->id, '_pr_last_source_verified', true );
$velocity = get_post_meta( $dto->id, '_pr_verification_velocity', true ) ?: 'medium';
$velocity = get_post_meta( $dto->id, '_pr_verification_velocity', true ) ?: 'medium'; // phpcs:ignore Universal.Operators.DisallowShortTernary.Found
// Empty verified date = treat as overdue.
if ( empty( $last_verified ) ) {
@@ -102,17 +114,17 @@ class PR_Core_Verification_Scanner {
* @return void
*/
private static function log_scan( int $total, int $due, int $overdue ): void {
$log = get_option( self::SCAN_LOG_OPTION_KEY, [] );
$log = get_option( self::SCAN_LOG_OPTION_KEY, array() );
if ( ! is_array( $log ) ) {
$log = [];
$log = array();
}
$log[] = [
$log[] = array(
'timestamp' => current_time( 'mysql' ),
'total' => $total,
'due' => $due,
'overdue' => $overdue,
];
);
// Keep only the last MAX_LOG_ENTRIES.
if ( count( $log ) > self::MAX_LOG_ENTRIES ) {
@@ -137,9 +149,12 @@ class PR_Core_Verification_Scanner {
// Parse comma-separated emails.
$emails = array_map( 'trim', explode( ',', $recipients ) );
$emails = array_filter( $emails, static function ( $email ) {
return is_email( $email );
} );
$emails = array_filter(
$emails,
static function ( $email ) {
return is_email( $email );
}
);
if ( empty( $emails ) ) {
return;
@@ -153,7 +168,7 @@ class PR_Core_Verification_Scanner {
$body = self::build_email_body( $due_peptides, $overdue_peptides );
wp_mail( $emails, $subject, $body, [ 'Content-Type: text/html; charset=UTF-8' ] );
wp_mail( $emails, $subject, $body, array( 'Content-Type: text/html; charset=UTF-8' ) );
}
/**
@@ -170,7 +185,7 @@ class PR_Core_Verification_Scanner {
$body .= '<h3>Overdue for review (' . count( $overdue_peptides ) . ')</h3><ul>';
foreach ( $overdue_peptides as $dto ) {
$edit_url = get_edit_post_link( $dto->id );
$body .= sprintf(
$body .= sprintf(
'<li><a href="%s">%s</a></li>',
esc_url( $edit_url ),
esc_html( $dto->title )
@@ -183,7 +198,7 @@ class PR_Core_Verification_Scanner {
$body .= '<h3>Due for review (' . count( $due_peptides ) . ')</h3><ul>';
foreach ( $due_peptides as $dto ) {
$edit_url = get_edit_post_link( $dto->id );
$body .= sprintf(
$body .= sprintf(
'<li><a href="%s">%s</a></li>',
esc_url( $edit_url ),
esc_html( $dto->title )