EscapeOutput sniff fires on the argument line of multi-line printf, not
the call site. Collapse to single-line echo so the phpcs:ignore inline
comment covers the offending expression. No functional change.
Agent-Session: prcore-jsonld-remediation-20260623
- class-pr-core-prab-meta-reader.php: restore proper multi-line docblocks
for all 7 class constants (WPCS requires separate summary line before @var
tag; inline @var description fails the short-description sniff). Also fix
return-with-assignment at is_triggered() lines (separate assign + return).
- class-pr-core-jsonld-article.php: add phpcs:ignore for
WordPress.Security.EscapeOutput on printf($json) — wp_json_encode() is the
canonical JSON escape; WPCS cannot trace through the intermediate variable.
No functional changes. File line counts: meta-reader 299, article 247.
Agent-Session: prcore-jsonld-remediation-20260623
P1-A: CONTEXT.md — add glossary entries for _prab_* namespace,
meta-reader pattern, ScholarlyArticle type, and honest-reviewedBy
integrity constraint (Person-vs-Organization branching rule).
P1-B: Master IA + app-map updated (workspace docs, not in this diff):
INFORMATION-ARCHITECTURE.md v1.3.2 — §5 cross-plugin data flow added
(PRAutoBlogger _prab_* meta → prcore JSON-LD Article emission); §4
version bumped to 0.8.0.
peptide-repo-core.md — two new classes in §2 file tree; §3 data flow
Mermaid extended with PRAB→MetaReader→Emitter chain; §5 cross-plugin
dependency noted; §6 hooks table updated; last-verified bumped to v0.8.0.
P1-C: JsonldArticleTest.php — add 5 new test methods:
- test_standalone_fallback_emits_nothing_for_untriggered_post()
- test_standalone_fallback_emits_valid_graph_for_triggered_post()
- test_standalone_fallback_suppressed_when_yoast_active()
- test_get_about_peptides_nonexistent_id_skipped()
- test_get_about_peptides_wrong_post_type_skipped()
Also add test_is_triggered_cache_returns_same_value() for P2-5 cache.
P2-1: get_about_peptides() — skip entries where get_permalink() returns ''.
P2-2: get_reviewed_by() — empty display_name falls through to Organization.
P2-3: register_hooks() — explicit priority 10 on wpseo_schema_webpage_type.
P2-4: emit_standalone_fallback() — guard wp_json_encode() false return;
also guard empty permalink before building the graph.
P2-5: is_triggered() — per-post avoids triple
get_post_meta reads when all three hooks fire for the same post.
P3s accepted (noted in QA verdict): P3-1 test-comment misleading;
P3-2 docblock @see gap on emit_standalone_fallback; P3-3 DOI regex.
Agent-Session: prcore-jsonld-remediation-20260623
All inline `/** @var ... */` single-line docblocks on class constants
and the $reader property are expanded to multi-line form with a proper
short description as the first tag (resolves
Generic.Commenting.DocComment.MissingShort on 8 locations across 2 files).
parse_url() → wp_parse_url() in sanitize_url() per WPCS
WordPress.WP.AlternativeFunctions.parse_url_parse_url (1 location).
No behaviour change: pure style/documentation fixes.
Agent-Session: prcore-jsonld-phpcs-20260623
Squash-merge of PR #22: adopt shared reusable CI workflow, convert PHPUnit to stubs, update branch-protection contexts.
QA-approved at 05d8094a1d. All required CI checks green.
Agent-Session: 2026-06-17-prcore-ci-deploy
- Register repo_daily CPT at /daily/[slug]/ for editorial publications
- Register repo_daily_category taxonomy with 4 seeded terms
- Add Repo Daily metabox for author byline and clinical review flag
- Bulk-migrate _repo_daily_author on autoblogged posts (psa_source)
- Update ARCHITECTURE.md with content-type table and scanner scope
- Update CONVENTIONS.md with repo_daily meta field extension pattern
- Bump version to 0.5.0, add CHANGELOG entry
Closes v0.5.0 scope.
v0.2.0 removed TAX_FAMILY from PR_Core_Peptide_CPT but left two stale
references in PR_Core_Peptide_Repository:
- find_all() family filter branch (class-pr-core-peptide-repository.php:95-102)
- post_to_dto() families taxonomy lookup (class-pr-core-peptide-repository.php:138)
JSON-LD emission on single-peptide templates called find_by_id() ->
post_to_dto() which hit the undefined constant and killed every peptide
detail page render mid-wp_head().
Fix:
- family filter is silently ignored until a future minor bump
removes it from the REST schema.
- post_to_dto() hardcodes $families = [] so the DTO still carries
the field (REST response shape unchanged for existing clients).
Out-of-scope follow-ups:
- Post-mortem on why the v0.2.0 QA gate missed this (unit tests
exercised the CPT class in isolation, not the repository's
consumption of its constants).
- Add an integration-style test for JSON-LD emission on a single
peptide so any future CPT-class refactor catches repository drift.
Co-authored-by: peptiderepo <peptiderepo@users.noreply.github.com>
Consolidates the `peptide` CPT under PR Core ownership, dropping the `pr_peptide` slug-collision that was 404ing all 89 peptide detail pages.
- POST_TYPE: pr_peptide -> peptide
- TAX_CATEGORY: pr_peptide_category -> peptide_category
- TAX_FAMILY + pr_peptide_family taxonomy removed
- Defensive post_type_exists/taxonomy_exists guards on both registrations
- Args harmonized as superset of PSA + prior PR Core (adds thumbnail support)
- Activation hook + init:999 version-change flush handler
- Uninstall scoped to _pr_core_authored flag (PSA-authored posts survive)
- Plugin version 0.1.1 -> 0.2.0, CHANGELOG in same commit
- ARCHITECTURE.md + CONVENTIONS.md updated with CPT ownership rule
QA gate verdict: PASS (qa-reviews/peptide-repo-core/2026-04-22-874f93b.md)
Sibling release: peptiderepo/peptide-search-ai#15 (PSA v4.5.0)
Known follow-up: manage_peptide_content capability is not granted to any role as of v0.2.0. No current UI/theme reads or writes PR Core-defined meta keys, so no regression. Follow-up thread to decide role assignment.
1. NAMESPACE is a PHP reserved keyword — renamed to REST_NAMESPACE
in the REST controller. This caused a parse error on activation.
2. Autoloader can't resolve PR_Core class — the class name equals the
autoloader prefix exactly, so stripping "PR_Core_" yields an empty
suffix and the wrong filename. Added explicit require_once in
bootstrap, same pattern as PRAutoBlogger.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
