Commit Graph

32 Commits

Author SHA1 Message Date
peptiderepo
deadccc27b ci: split deploy.yml into staging→production pipeline with approval gate 2026-04-24 13:11:24 +07:00
peptiderepo
05cb3caf0d hotfix: CHANGELOG v0.3.1 2026-04-24 12:07:42 +07:00
peptiderepo
21d05427d8 hotfix: bump to v0.3.1 2026-04-24 12:07:40 +07:00
peptiderepo
9c59fe6706 hotfix: add missing PR_Core_Related_Posts_Provider interface (site down — v0.3.1) 2026-04-24 12:07:23 +07:00
peptiderepo
e0fcace223 feat: add Related Articles Section feature (v0.3.0)
Merges feature/related-articles-section.

Adds peptide_topic taxonomy, provider interface, internal posts provider, card grid renderer, admin settings, CSS, and unit tests.

Reviewed: qa-reviews/peptide-repo-core/2026-04-24-a10610ded7df.md
CI: PHP 8.1/8.2/8.3 lint, PHPCS, 300-line check — all green.
2026-04-24 10:25:17 +07:00
peptiderepo
a10610ded7 fix: trim CPT docblock to stay under 300-line limit 2026-04-24 10:22:50 +07:00
peptiderepo
2195b449b2 fix: restore missing return + closing braces in sanitize_review_status 2026-04-24 10:21:20 +07:00
peptiderepo
ba4e11192f fix: bring CPT class under 300 lines 2026-04-24 10:15:45 +07:00
peptiderepo
0f62abd6e9 fix: instantiate PR_Core_Topic_Taxonomy in init flow 2026-04-24 10:14:31 +07:00
peptiderepo
b885673a1f feat: instantiate PR_Core_Topic_Taxonomy in init flow 2026-04-24 10:11:53 +07:00
peptiderepo
35e62e8cf1 fix: remove peptide_topic from CPT class, bring under 300 lines 2026-04-24 10:11:33 +07:00
peptiderepo
bd1b2dba48 feat: extract peptide_topic taxonomy to own class 2026-04-24 10:11:03 +07:00
peptiderepo
0dcad0de0b docs: add v0.3.0 changelog entry for Related Articles feature 2026-04-24 10:03:52 +07:00
peptiderepo
d5376d1612 chore: bump version to 0.3.0 2026-04-24 10:03:03 +07:00
peptiderepo
28e110f780 feat: integrate Related Articles section into main orchestrator 2026-04-24 10:02:50 +07:00
peptiderepo
bb34998d2c feat: integrate settings into admin initialization 2026-04-24 10:02:26 +07:00
peptiderepo
2e7efab97a feat: add PR Core settings page 2026-04-24 10:02:10 +07:00
peptiderepo
0210d73cf7 feat: add peptide_topic taxonomy registration 2026-04-24 10:01:47 +07:00
peptiderepo
14f8e6159a test: add unit tests for PR_Core_Internal_Posts_Provider 2026-04-24 10:01:00 +07:00
peptiderepo
6359a18fed feat: add related-posts CSS styles 2026-04-24 10:00:55 +07:00
peptiderepo
33dc8a183a feat: add related-posts card template part 2026-04-24 10:00:51 +07:00
peptiderepo
a21d35ee27 feat: add PR_Core_Related_Posts_Section renderer 2026-04-24 10:00:47 +07:00
peptiderepo
a906e1b701 feat: add PR_Core_Internal_Posts_Provider implementation 2026-04-24 10:00:43 +07:00
peptiderepo
4d8e98f34b feat: add PR_Core_Related_Posts_Provider interface 2026-04-24 10:00:38 +07:00
peptiderepo
bb3967a071 fix(repo): drop stale TAX_FAMILY references (v0.2.1 P1 hotfix) (#2)
v0.2.0 removed TAX_FAMILY from PR_Core_Peptide_CPT but left two stale
references in PR_Core_Peptide_Repository:
  - find_all() family filter branch (class-pr-core-peptide-repository.php:95-102)
  - post_to_dto() families taxonomy lookup (class-pr-core-peptide-repository.php:138)

JSON-LD emission on single-peptide templates called find_by_id() ->
post_to_dto() which hit the undefined constant and killed every peptide
detail page render mid-wp_head().

Fix:
  - family filter is silently ignored until a future minor bump
    removes it from the REST schema.
  - post_to_dto() hardcodes $families = [] so the DTO still carries
    the field (REST response shape unchanged for existing clients).

Out-of-scope follow-ups:
  - Post-mortem on why the v0.2.0 QA gate missed this (unit tests
    exercised the CPT class in isolation, not the repository's
    consumption of its constants).
  - Add an integration-style test for JSON-LD emission on a single
    peptide so any future CPT-class refactor catches repository drift.

Co-authored-by: peptiderepo <peptiderepo@users.noreply.github.com>
2026-04-22 16:56:42 +07:00
peptiderepo
f086b89e2d feat(cpt): consolidate peptide CPT with PSA; drop pr_peptide (v0.2.0) (#1)
Consolidates the `peptide` CPT under PR Core ownership, dropping the `pr_peptide` slug-collision that was 404ing all 89 peptide detail pages.

- POST_TYPE: pr_peptide -> peptide
- TAX_CATEGORY: pr_peptide_category -> peptide_category
- TAX_FAMILY + pr_peptide_family taxonomy removed
- Defensive post_type_exists/taxonomy_exists guards on both registrations
- Args harmonized as superset of PSA + prior PR Core (adds thumbnail support)
- Activation hook + init:999 version-change flush handler
- Uninstall scoped to _pr_core_authored flag (PSA-authored posts survive)
- Plugin version 0.1.1 -> 0.2.0, CHANGELOG in same commit
- ARCHITECTURE.md + CONVENTIONS.md updated with CPT ownership rule

QA gate verdict: PASS (qa-reviews/peptide-repo-core/2026-04-22-874f93b.md)
Sibling release: peptiderepo/peptide-search-ai#15 (PSA v4.5.0)

Known follow-up: manage_peptide_content capability is not granted to any role as of v0.2.0. No current UI/theme reads or writes PR Core-defined meta keys, so no regression. Follow-up thread to decide role assignment.
2026-04-22 16:44:04 +07:00
peptiderepo
c70352eb40 fix: two fatal errors preventing plugin activation (v0.1.1)
1. NAMESPACE is a PHP reserved keyword — renamed to REST_NAMESPACE
   in the REST controller. This caused a parse error on activation.

2. Autoloader can't resolve PR_Core class — the class name equals the
   autoloader prefix exactly, so stripping "PR_Core_" yields an empty
   suffix and the wrong filename. Added explicit require_once in
   bootstrap, same pattern as PRAutoBlogger.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-19 16:13:21 +07:00
peptiderepo
3162dbe975 ci: add workflow_call trigger so deploy.yml can reuse CI
The deploy workflow references ci.yml as a reusable workflow
via `uses: ./.github/workflows/ci.yml`. Without workflow_call
in the trigger list, GitHub Actions rejects the reference.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-17 17:16:38 +07:00
peptiderepo
843c4746ec ci: add deploy-to-Hostinger workflow
Rsync over SSH on push to main. Runs CI first, then syncs
production files to wp-content/plugins/peptide-repo-core/
on Hostinger. Includes LiteSpeed cache purge and health check.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-17 17:14:30 +07:00
peptiderepo
c9361b0283 fix(ci): restructure CI for PHP 8.1+ and proper PHPCS setup
- Drop PHP 8.0 from matrix — DTOs use readonly properties (8.1+)
- Add composer.json with PHPCS/WPCS as dev dependencies
- Add phpcs.xml.dist for WordPress coding standard config
- Use dealerdirect/phpcodesniffer-composer-installer for auto path setup
- Separate lint jobs: PHP syntax (8.1/8.2/8.3) + PHPCS + file-size
- Update Requires PHP header to 8.1
- Update ARCHITECTURE.md file tree

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-17 07:43:01 +07:00
peptiderepo
106f15e027 fix(ci): pin PHPCS to ^3.13 for WPCS compatibility
PHPCS 4.0.1 was installed first via sequential composer require,
locking the version before WPCS could constrain it. WPCS 3.x
requires PHPCS ^3.x. Fix: install all packages in one command
with --with-all-dependencies and pin PHPCS to ^3.13.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-17 07:40:16 +07:00
peptiderepo
808b2509d8 feat: initial peptide-repo-core plugin (v0.1.0) — canonical schema sprint
Implements ADR-0002: canonical peptide schema as shared data layer for
the peptiderepo.com ecosystem. All Tier 1 tools (Reconstitution Calculator,
Dosage Reference, Legal Status Tracker, PSA enhancements) build on this.

Includes:
- pr_peptide CPT with REST, taxonomies, 11 meta fields
- 3 custom tables: pr_dosing_rows, pr_legal_cells, pr_ai_candidate_queue
- Sequential migration runner with schema versioning
- 4 typed DTOs and 4 repository classes (full CRUD)
- REST API (pr-core/v1): 6 endpoints (read public, write auth-gated)
- Admin UI: 3 meta boxes, custom columns, AI candidate queue page
- Shared disclaimer component (shortcode + static API)
- JSON-LD Drug schema emission on single peptide pages
- Seed data fixture (3 peptides, 10 dosing rows, 5 legal cells)
- Full teardown in uninstall.php
- CI: PHP lint 8.0-8.2, PHPCS WordPress, 300-line check

All 22 PHP files under 300 lines. Highest: peptide-cpt at 265.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-17 07:36:12 +07:00