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claude/fix
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feature/ve
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6d96768892 | ||
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a90bb7ca4c |
104
CHANGELOG.md
104
CHANGELOG.md
@@ -3,41 +3,39 @@
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All notable changes to Peptide Repo Core are documented here.
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Format: [Semantic Versioning](https://semver.org/).
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## [0.3.2] — 2026-04-25
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||||
### Fixed
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- Remove `rest_namespace` from peptide CPT registration. Custom namespace prevented Gutenberg block editor from loading peptide posts for editing (404 on wp/v2 REST route). All 89 peptide entries are now editable in the block editor. (#5)
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## [0.3.1] — 2026-04-24
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### Fixed
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- Add missing `PR_Core_Related_Posts_Provider` interface file (`class-pr-core-related-posts-provider.php`).
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Omitted from v0.3.0 deploy caused a fatal on every page load. Site was down until this fix.
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## [0.3.0] — 2026-04-24
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## [0.4.0] — 2026-04-27
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### Added
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- **Related Articles feature** — New `peptide_topic` taxonomy links blog posts to peptides by slug. Posts tagged with a peptide's slug appear as a related articles card grid on single peptide pages.
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- `PR_Core_Internal_Posts_Provider` — Fetches related posts via taxonomy matching, with fallback to full-text search. Results cached 1 hour per peptide.
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- `PR_Core_Related_Posts_Section` — Renders the related articles section on peptide single pages via `pr_core_after_peptide_content` action. Respects admin settings for feature toggle and display limit.
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- `PR_Core_Settings` — Admin settings page under Peptides menu. Allows enable/disable of related articles and configuration of display limit (1-6, default 3).
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- Template part `template-parts/related-posts/card.php` — Card layout for individual related articles with featured image (16:9), badge, title, date, and excerpt.
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- CSS file `assets/css/related-posts.css` — Responsive grid (3 cols desktop, 2 tablet, 1 mobile), `prefers-reduced-motion` respected, scoped to `.pr-related-posts`.
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- Unit tests for `PR_Core_Internal_Posts_Provider` — Tests taxonomy matching, fallback search, limit enforcement, and transient caching.
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- `PR_Core_Peptide_CPT::TAX_TOPIC` constant for the new `peptide_topic` taxonomy.
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- **Verification Scanner**: Automated periodic scanning of all published peptides to compute verification status (current/due/overdue) based on days since last verification and configurable velocity-based thresholds.
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- **Verification Settings**: New admin settings page under Peptides menu with configuration for scan cadence (daily/weekly/monthly), staleness thresholds (default 180 days, high-velocity 60 days, low-velocity 365 days), and notification email recipients.
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- **Dashboard Widget**: "Monographs Needing Review" dashboard widget showing all peptides due or overdue for verification, sorted by staleness, with direct edit links and one-click scan trigger.
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- **Editor Sidebar Meta Box**: New "Verification Status" sidebar meta box on peptide edit screen showing last-verified date, velocity selector, status badge, and one-click "Mark Verified Today" button that sets verification date to current time and recomputes status.
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- **Admin AJAX Handlers**: Two new admin-ajax actions:
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- `pr_core_mark_verified`: Sets `_pr_last_source_verified` to today, saves optional notes, recomputes status.
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- `pr_core_scan_now`: Runs verification scanner immediately from the dashboard widget.
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- **Frontend Verification Display**: On single-peptide pages, displays "Last verified: [date] — methodology" text after the verdict card div (requires non-empty `_pr_last_source_verified` meta field).
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- **Verification Meta Fields** (registered in CPT):
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- `_pr_last_source_verified`: ISO datetime of most recent source verification.
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- `_pr_last_reviewed`: ISO datetime of editorial review (phase 2 integration point).
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- `_pr_next_review_by`: ISO datetime of next scheduled review (phase 2 integration point).
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- `_pr_verification_velocity`: Enum (low/medium/high) controlling threshold application.
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- `_pr_verification_notes`: Textarea for reviewer notes on the most recent verification pass.
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- `_pr_verification_status`: Enum (current/due/overdue) computed by scanner; drives widget sorting and badge color.
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- **Scan Log**: Option `pr_core_verification_scan_log` stores last 90 scan summaries (timestamp, total count, due count, overdue count) for audit trail and health monitoring.
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- **Email Digest**: When scans detect due/overdue peptides, a digest email is sent to configured recipients (default: none, must opt-in) with links to edit each peptide and the verification dashboard.
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### Changed
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- `PR_Core_Peptide_CPT::register_taxonomies()` now registers both `peptide_category` (peptide → peptide) and `peptide_topic` (post → peptide) taxonomies.
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- `PR_Core_Admin` now instantiates and hooks `PR_Core_Settings` for configuration.
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- `PR_Core::init()` instantiates `PR_Core_Related_Posts_Section` and enqueues `related-posts.css` on single peptide pages.
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- `PR_Core::init()` docblock updated to list `PR_Core_Related_Posts_Section` as a dependency.
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- Version bumped to `0.3.0`.
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- CPT meta field registration now includes 6 new verification fields alongside existing dosing/legal/editorial fields.
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### Notes
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- The `pr_core_after_peptide_content` action must be called in peptide single-page templates to display the related articles section. This hook fires after the main peptide content.
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- Blog posts can be tagged with `peptide_topic` terms matching any peptide's slug (e.g., 'bpc-157', 'tb-500') to appear as related articles on that peptide's page.
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- Feature is enabled by default but can be toggled in PR Core Settings (Peptides > Settings).
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- Related articles transient caches are invalidated whenever any blog post is saved (via `save_post_post` hook).
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### Technical
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- New classes: `PR_Core_Verification_Scanner`, `PR_Core_Settings`, `PR_Core_Verification_Widget`, `PR_Core_Verification_Display`, `PR_Core_Ajax_Handlers`.
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- New unit tests: `test-verification-scanner.php` (status computation logic), `test-verification-settings.php` (cadence/cron scheduling).
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- WordPress cron integration: `pr_core_verification_scan` hook scheduled at activation, cleared at deactivation, rescheduled when cadence changes.
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## [0.2.2] — 2026-04-25
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### Fixed
|
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- Remove `rest_namespace` from peptide CPT registration. Custom namespace prevented Gutenberg block editor from loading peptide posts for editing (404 on wp/v2 REST route). All 89 peptide entries are now editable in the block editor.
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## [0.2.1] — 2026-04-22
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@@ -59,49 +57,3 @@ Format: [Semantic Versioning](https://semver.org/).
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### Added
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- `PR_Core_Activator::maybe_flush_on_version_change()` — one-shot rewrite flush on in-place version bumps (hooked at `init` priority 999). Eliminates the need for a manual `wp rewrite flush` after updates that change CPT/taxonomy slugs.
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- `_pr_core_authored` post-meta flag contract — peptide posts created via PR Core UI carry this flag; `uninstall.php` uses it to scope teardown to plugin-owned posts only.
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- Lightweight unit-test harness (`tests/bootstrap.php` + `tests/unit/test-peptide-cpt.php`) that exercises CPT/taxonomy guards and args payload shape without a PHPUnit + wp-env dependency. Wired into the existing PHP-lint CI job.
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### Removed
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- `pr_peptide_family` taxonomy — never populated, never surfaced in UI.
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- All `pr_peptide*` CPT-slug-derived references (constants, docblock mentions, uninstall string literals).
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- Blanket `DELETE FROM posts WHERE post_type = 'pr_peptide'` on uninstall. Replaced with a join-on-`_pr_core_authored` selective delete so PSA-authored peptide posts are never destroyed by PR Core teardown.
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- Taxonomy-term cleanup on uninstall. `peptide_category` is shared ownership post-v0.2.0; term data the site still needs is preserved.
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### Fixed
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- Production peptide detail pages (all 89) were 404'ing due to a rewrite slug collision between PSA's `peptide` CPT and PR Core's `pr_peptide` CPT both claiming `/peptides/%postname%/`. PR Core v0.1.1's empty `pr_peptide` CPT was winning the rewrite resolution. This release consolidates both to a single `peptide` CPT owned by PR Core.
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### Notes
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- Scope of the `pr_peptide*` scrub is intentionally narrow: CPT-slug-derived identifiers only. Class names (`PR_Core_Peptide_CPT`), file names (`class-pr-core-peptide-cpt.php`), plugin constants (`PR_CORE_VERSION`), option keys (`pr_core_*`), and the REST namespace (`pr-core/v1`) are the plugin's own namespace, not the CPT slug, and are preserved verbatim.
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- PR Core-defined meta keys (`display_name`, `aliases`, `evidence_strength`, `editorial_review_status`, …) are gated by `manage_peptide_content`. The activator grants this capability to `administrator` and `editor` roles on activation. Prod sites where the activation hook never fired (v0.1.1 was deployed manually) will receive the grant on next `wp plugin activate peptide-repo-core`. Follow-up thread to decide whether a dedicated `peptide_editor` role is more appropriate than extending core `editor`.
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## [0.1.1] — 2026-04-19
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### Fixed
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- **Fatal error on activation: `NAMESPACE` is a PHP reserved keyword.** Renamed
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to `REST_NAMESPACE` in the REST controller.
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- **Fatal error: autoloader cannot resolve `PR_Core` class.** Class name equals
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the autoloader prefix exactly, producing wrong filename. Added explicit
|
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require_once in bootstrap (same pattern as PRAutoBlogger).
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## [0.1.0] — 2026-04-17
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### Added
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- `pr_peptide` custom post type with REST API, archive, and taxonomies (`pr_peptide_category`, `pr_peptide_family`).
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- Post-meta fields: display_name, aliases, molecular_formula, molecular_weight, cas_number, drugbank_id, chembl_id, evidence_strength, editorial_review_status, last_editorial_review_at, medical_editor_id.
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- Custom table `pr_dosing_rows` with schema migration 0001 — high-cardinality dosing data with citation tracking, evidence strength, and supersede (soft-delete) pattern.
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- Custom table `pr_legal_cells` with schema migration 0002 — per-country legal status with unique constraint on peptide x country (active).
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- Custom table `pr_ai_candidate_queue` with schema migration 0003 — AI-extracted dosing candidates awaiting human review.
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- Migration runner with sequential versioning (`pr_core_schema_version` option, `PR_CORE_TARGET_SCHEMA_VERSION` constant).
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- Typed DTOs: `PR_Core_Peptide_DTO`, `PR_Core_Dosing_Row_DTO`, `PR_Core_Legal_Cell_DTO`, `PR_Core_Candidate_DTO`.
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- Repository classes: `PR_Core_Peptide_Repository`, `PR_Core_Dosing_Repository`, `PR_Core_Legal_Repository`, `PR_Core_Candidate_Queue_Repository`.
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- REST API (`pr-core/v1`): list/get peptides, list/create dosing rows, list/create legal cells.
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- Admin UI: Scientific Identifiers meta box, Dosing Data meta box (read-only), Legal Status meta box (read-only), custom list-table columns (Evidence, Editorial, Dosing Rows).
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- AI Candidate Queue admin page with approve/reject workflow (copies approved rows to dosing table).
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- Shared disclaimer component: `[pr_disclaimer surface="dosing"]` shortcode, `PR_Core_Disclaimer::render()` static method, `pr_core_disclaimer_for_surface` filter.
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- JSON-LD emission: schema.org `Drug` type on single peptide pages with `pr_core_jsonld_peptide` filter.
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- Public API filters: `pr_core_get_indexable_corpus`, `pr_core_disclaimer_for_surface`, `pr_core_evidence_strength_label`.
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- Public API actions: `pr_core_before/after_peptide_publish`, `pr_core_before/after_dosing_row_publish`, `pr_core_before/after_legal_cell_publish`, `pr_core_candidate_approved/rejected`.
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- `manage_peptide_content` capability granted to administrators and editors on activation.
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- Full teardown in `uninstall.php` (tables, posts, terms, options, capabilities).
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- Seed data fixture: 3 peptides (BPC-157, Semaglutide, TB-500), 10 dosing rows, 5 legal cells.
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- CI workflow: PHP lint (8.0/8.1/8.2), PHPCS (WordPress standard), 300-line file check.
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||||
@@ -4,16 +4,15 @@ declare(strict_types=1);
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/**
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* Admin initialization and hook registration.
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*
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||||
* What: Registers admin menu pages, meta boxes, custom columns, and settings
|
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* for peptides and related features.
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* What: Registers admin menu pages, meta boxes, and custom columns for peptides.
|
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* Who calls it: PR_Core::init() when is_admin().
|
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* Dependencies: PR_Core_Peptide_Metaboxes, PR_Core_Candidate_Queue_Page,
|
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* PR_Core_Admin_Columns, PR_Core_Settings.
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||||
* Dependencies: PR_Core_Peptide_Metaboxes, PR_Core_Verification_Metabox,
|
||||
* PR_Core_Candidate_Queue_Page, PR_Core_Admin_Columns.
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*
|
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* @see admin/class-pr-core-peptide-metaboxes.php — Dosing + legal meta boxes.
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||||
* @see admin/class-pr-core-verification-metabox.php — Verification sidebar meta box.
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* @see admin/class-pr-core-candidate-queue-page.php — Candidate review screen.
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* @see admin/class-pr-core-admin-columns.php — Custom list-table columns.
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* @see admin/class-pr-core-settings.php — Plugin settings page.
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||||
*/
|
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class PR_Core_Admin {
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@@ -29,13 +28,12 @@ class PR_Core_Admin {
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add_action( 'add_meta_boxes', [ $metaboxes, 'add_meta_boxes' ] );
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add_action( 'save_post_' . PR_Core_Peptide_CPT::POST_TYPE, [ $metaboxes, 'save_meta' ], 10, 2 );
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|
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add_action( 'add_meta_boxes', [ PR_Core_Verification_Metabox::class, 'register' ] );
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|
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$columns = new PR_Core_Admin_Columns();
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add_filter( 'manage_' . PR_Core_Peptide_CPT::POST_TYPE . '_posts_columns', [ $columns, 'add_columns' ] );
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add_action( 'manage_' . PR_Core_Peptide_CPT::POST_TYPE . '_posts_custom_column', [ $columns, 'render_column' ], 10, 2 );
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|
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$settings = new PR_Core_Settings();
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$settings->register_hooks();
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|
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add_action( 'admin_menu', [ $this, 'add_admin_pages' ] );
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add_action( 'admin_enqueue_scripts', [ $this, 'enqueue_admin_styles' ] );
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}
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79
includes/admin/class-pr-core-ajax-handlers.php
Normal file
79
includes/admin/class-pr-core-ajax-handlers.php
Normal file
@@ -0,0 +1,79 @@
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<?php
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declare(strict_types=1);
|
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|
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/**
|
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* AJAX handlers for verification scanner actions.
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*
|
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* What: Handles mark-verified and scan-now admin-ajax actions.
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* Who calls it: PR_Core::init() registers the wp_ajax hooks.
|
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* Dependencies: None.
|
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*
|
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* @see admin/class-pr-core-peptide-metaboxes.php — "Mark verified today" button in sidebar.
|
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* @see admin/class-pr-core-verification-widget.php — "Scan now" button in dashboard widget.
|
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*/
|
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class PR_Core_Ajax_Handlers {
|
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|
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/**
|
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* Handle mark-verified AJAX action.
|
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*
|
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* Updates _pr_last_source_verified to today, saves notes, recomputes status.
|
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*
|
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* Side effects: Updates post meta, returns JSON.
|
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*
|
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* @return void
|
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*/
|
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public static function handle_mark_verified(): void {
|
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// Verify nonce.
|
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$nonce = sanitize_text_field( wp_unslash( $_POST['nonce'] ?? '' ) );
|
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if ( ! wp_verify_nonce( $nonce, 'wp_nonce' ) ) {
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wp_send_json_error( 'Invalid nonce' );
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}
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// Get post ID and verify capability.
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$post_id = absint( wp_unslash( $_POST['post_id'] ?? 0 ) );
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if ( ! $post_id || ! current_user_can( PR_Core_Peptide_CPT::CAPABILITY ) ) {
|
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wp_send_json_error( 'Unauthorized' );
|
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}
|
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|
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// Update verified date.
|
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update_post_meta( $post_id, '_pr_last_source_verified', current_time( 'mysql' ) );
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|
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// Save notes if provided.
|
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$notes = sanitize_textarea_field( wp_unslash( $_POST['notes'] ?? '' ) );
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if ( $notes ) {
|
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update_post_meta( $post_id, '_pr_verification_notes', $notes );
|
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}
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|
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// Recompute status to 'current'.
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update_post_meta( $post_id, '_pr_verification_status', 'current' );
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|
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wp_send_json_success( [ 'message' => 'Marked verified' ] );
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}
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/**
|
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* Handle scan-now AJAX action.
|
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*
|
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* Runs verification scanner immediately.
|
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*
|
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* Side effects: Runs scan, returns JSON.
|
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*
|
||||
* @return void
|
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*/
|
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public static function handle_scan_now(): void {
|
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// Verify nonce.
|
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$nonce = sanitize_text_field( wp_unslash( $_POST['nonce'] ?? '' ) );
|
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if ( ! wp_verify_nonce( $nonce, 'pr_core_scan_now' ) ) {
|
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wp_send_json_error( 'Invalid nonce' );
|
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}
|
||||
|
||||
// Verify capability.
|
||||
if ( ! current_user_can( 'manage_options' ) ) {
|
||||
wp_send_json_error( 'Unauthorized' );
|
||||
}
|
||||
|
||||
// Run scan.
|
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PR_Core_Verification_Scanner::run_scan();
|
||||
|
||||
wp_send_json_success( [ 'message' => 'Scan complete' ] );
|
||||
}
|
||||
}
|
||||
@@ -2,110 +2,69 @@
|
||||
declare(strict_types=1);
|
||||
|
||||
/**
|
||||
* Settings page for PR Core plugin features.
|
||||
* Settings page for PR Core plugin configuration.
|
||||
*
|
||||
* What: Registers admin menu, renders settings form, and handles option saves
|
||||
* for features like Related Articles.
|
||||
* Who calls it: PR_Core_Admin::register_hooks().
|
||||
* Dependencies: None (reads/writes wp_options).
|
||||
* What: Static admin settings class. Registers and renders the PR Core settings
|
||||
* page under Peptides, with sections for Related Articles and Verification.
|
||||
* Who calls it: PR_Core::init() via admin_menu and admin_init hooks.
|
||||
* Dependencies: PR_Core_Peptide_CPT (for CAPABILITY constant).
|
||||
*
|
||||
* @see class-pr-core.php — Registers admin_menu + admin_init hooks pointing here.
|
||||
*/
|
||||
class PR_Core_Settings {
|
||||
|
||||
/** @var string Option group shared by all PR Core settings. */
|
||||
public const OPTION_GROUP = 'pr_core_settings';
|
||||
|
||||
/** @var string Option key: enable/disable related articles. */
|
||||
private const ENABLED_OPTION = 'pr_core_related_posts_enabled';
|
||||
private const RELATED_ENABLED = 'pr_core_related_posts_enabled';
|
||||
|
||||
/** @var string Option key: related articles limit (1-6). */
|
||||
private const LIMIT_OPTION = 'pr_core_related_posts_limit';
|
||||
private const RELATED_LIMIT = 'pr_core_related_posts_limit';
|
||||
|
||||
/** @var string Option key: WP-cron scan cadence. */
|
||||
private const SCAN_CADENCE = 'pr_core_scan_cadence';
|
||||
|
||||
/** @var string Option key: default staleness threshold in days. */
|
||||
private const DEFAULT_THRESHOLD = 'pr_core_default_threshold';
|
||||
|
||||
/** @var string Option key: high-velocity staleness threshold in days. */
|
||||
private const HIGH_VELOCITY_THRESHOLD = 'pr_core_high_velocity_threshold';
|
||||
|
||||
/** @var string Option key: comma-separated notification email list. */
|
||||
private const VERIFICATION_EMAIL = 'pr_core_verification_email';
|
||||
|
||||
/**
|
||||
* Register admin page and settings hooks.
|
||||
* Register the settings submenu page under Peptides.
|
||||
*
|
||||
* Side effects: calls add_submenu_page().
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public function register_hooks(): void {
|
||||
add_action( 'admin_menu', [ $this, 'add_settings_page' ] );
|
||||
add_action( 'admin_init', [ $this, 'register_settings' ] );
|
||||
}
|
||||
|
||||
/**
|
||||
* Add submenu page under Peptides.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public function add_settings_page(): void {
|
||||
public static function add_settings_page(): void {
|
||||
add_submenu_page(
|
||||
'edit.php?post_type=' . PR_Core_Peptide_CPT::POST_TYPE,
|
||||
__( 'PR Core Settings', 'peptide-repo-core' ),
|
||||
__( 'Settings', 'peptide-repo-core' ),
|
||||
'manage_options',
|
||||
'pr-core-settings',
|
||||
[ $this, 'render_page' ]
|
||||
[ __CLASS__, 'render_page' ]
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Register settings fields.
|
||||
* Render the settings page form.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public function register_settings(): void {
|
||||
register_setting(
|
||||
'pr_core_settings',
|
||||
self::ENABLED_OPTION,
|
||||
[
|
||||
'type' => 'boolean',
|
||||
'default' => true,
|
||||
'sanitize_callback' => 'rest_sanitize_boolean',
|
||||
]
|
||||
);
|
||||
|
||||
register_setting(
|
||||
'pr_core_settings',
|
||||
self::LIMIT_OPTION,
|
||||
[
|
||||
'type' => 'integer',
|
||||
'default' => 3,
|
||||
'sanitize_callback' => [ $this, 'sanitize_limit' ],
|
||||
]
|
||||
);
|
||||
|
||||
add_settings_section(
|
||||
'pr_core_related_articles',
|
||||
__( 'Related Articles', 'peptide-repo-core' ),
|
||||
[ $this, 'render_section' ],
|
||||
'pr_core_settings'
|
||||
);
|
||||
|
||||
add_settings_field(
|
||||
self::ENABLED_OPTION,
|
||||
__( 'Enable Related Articles', 'peptide-repo-core' ),
|
||||
[ $this, 'render_enabled_field' ],
|
||||
'pr_core_settings',
|
||||
'pr_core_related_articles'
|
||||
);
|
||||
|
||||
add_settings_field(
|
||||
self::LIMIT_OPTION,
|
||||
__( 'Number of Articles to Display', 'peptide-repo-core' ),
|
||||
[ $this, 'render_limit_field' ],
|
||||
'pr_core_settings',
|
||||
'pr_core_related_articles'
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Render the settings page.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public function render_page(): void {
|
||||
public static function render_page(): void {
|
||||
?>
|
||||
<div class="wrap">
|
||||
<h1><?php esc_html_e( 'Peptide Repo Core Settings', 'peptide-repo-core' ); ?></h1>
|
||||
<h1><?php esc_html_e( 'PR Core Settings', 'peptide-repo-core' ); ?></h1>
|
||||
<form method="post" action="options.php">
|
||||
<?php
|
||||
settings_fields( 'pr_core_settings' );
|
||||
do_settings_sections( 'pr_core_settings' );
|
||||
settings_fields( self::OPTION_GROUP );
|
||||
do_settings_sections( self::OPTION_GROUP );
|
||||
submit_button();
|
||||
?>
|
||||
</form>
|
||||
@@ -114,63 +73,159 @@ class PR_Core_Settings {
|
||||
}
|
||||
|
||||
/**
|
||||
* Render section description.
|
||||
* Register all settings, sections, and fields on admin_init.
|
||||
*
|
||||
* Side effects: calls register_setting(), add_settings_section(),
|
||||
* add_settings_field(), add_action() for cron reschedule.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public function render_section(): void {
|
||||
echo '<p>' . esc_html__( 'Configure the Related Articles section that appears on peptide single pages.', 'peptide-repo-core' ) . '</p>';
|
||||
public static function register_settings(): void {
|
||||
self::register_related_articles_section();
|
||||
self::register_verification_section();
|
||||
add_action( 'update_option_' . self::SCAN_CADENCE, [ __CLASS__, 'reschedule_cron' ], 10, 2 );
|
||||
}
|
||||
|
||||
// ── Related Articles ─────────────────────────────────────────────────
|
||||
|
||||
/**
|
||||
* Render enabled toggle field.
|
||||
* Register Related Articles settings.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public function render_enabled_field(): void {
|
||||
$checked = (bool) get_option( self::ENABLED_OPTION, true );
|
||||
?>
|
||||
<input
|
||||
type="checkbox"
|
||||
name="<?php echo esc_attr( self::ENABLED_OPTION ); ?>"
|
||||
value="1"
|
||||
<?php checked( $checked, true ); ?>
|
||||
/>
|
||||
<label>
|
||||
<?php esc_html_e( 'Display related articles on peptide pages', 'peptide-repo-core' ); ?>
|
||||
</label>
|
||||
<?php
|
||||
private static function register_related_articles_section(): void {
|
||||
register_setting( self::OPTION_GROUP, self::RELATED_ENABLED, [ 'type' => 'boolean', 'default' => true, 'sanitize_callback' => 'rest_sanitize_boolean' ] );
|
||||
register_setting( self::OPTION_GROUP, self::RELATED_LIMIT, [ 'type' => 'integer', 'default' => 3, 'sanitize_callback' => [ __CLASS__, 'sanitize_limit' ] ] );
|
||||
|
||||
add_settings_section( 'pr_core_related_articles', __( 'Related Articles', 'peptide-repo-core' ), '__return_false', self::OPTION_GROUP );
|
||||
add_settings_field( self::RELATED_ENABLED, __( 'Enable Related Articles', 'peptide-repo-core' ), [ __CLASS__, 'render_enabled_field' ], self::OPTION_GROUP, 'pr_core_related_articles' );
|
||||
add_settings_field( self::RELATED_LIMIT, __( 'Number of Articles', 'peptide-repo-core' ), [ __CLASS__, 'render_limit_field' ], self::OPTION_GROUP, 'pr_core_related_articles' );
|
||||
}
|
||||
|
||||
/** @return void */
|
||||
public static function render_enabled_field(): void {
|
||||
$enabled = (bool) get_option( self::RELATED_ENABLED, true );
|
||||
printf(
|
||||
'<input type="checkbox" name="%s" value="1"%s /> %s',
|
||||
esc_attr( self::RELATED_ENABLED ),
|
||||
checked( $enabled, true, false ),
|
||||
esc_html__( 'Show related monographs on single peptide pages', 'peptide-repo-core' )
|
||||
);
|
||||
}
|
||||
|
||||
/** @return void */
|
||||
public static function render_limit_field(): void {
|
||||
printf(
|
||||
'<input type="number" name="%s" value="%d" min="1" max="6" />',
|
||||
esc_attr( self::RELATED_LIMIT ),
|
||||
absint( get_option( self::RELATED_LIMIT, 3 ) )
|
||||
);
|
||||
echo '<p class="description">' . esc_html__( 'Number of articles to display (1-6). Default: 3.', 'peptide-repo-core' ) . '</p>';
|
||||
}
|
||||
|
||||
/**
|
||||
* Render limit field.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public function render_limit_field(): void {
|
||||
$limit = (int) get_option( self::LIMIT_OPTION, 3 );
|
||||
?>
|
||||
<input
|
||||
type="number"
|
||||
name="<?php echo esc_attr( self::LIMIT_OPTION ); ?>"
|
||||
value="<?php echo esc_attr( (string) $limit ); ?>"
|
||||
min="1"
|
||||
max="6"
|
||||
/>
|
||||
<p class="description">
|
||||
<?php esc_html_e( 'Number of articles to display (1-6). Default: 3.', 'peptide-repo-core' ); ?>
|
||||
</p>
|
||||
<?php
|
||||
}
|
||||
|
||||
/**
|
||||
* Sanitize limit to 1-6 range.
|
||||
* Sanitize the related articles limit to 1-6.
|
||||
*
|
||||
* @param mixed $value Raw input.
|
||||
* @return int Sanitized value.
|
||||
* @return int
|
||||
*/
|
||||
public function sanitize_limit( $value ): int {
|
||||
$limit = (int) $value;
|
||||
return min( 6, max( 1, $limit ) );
|
||||
public static function sanitize_limit( $value ): int {
|
||||
return min( 6, max( 1, (int) $value ) );
|
||||
}
|
||||
|
||||
// ── Verification ─────────────────────────────────────────────────────
|
||||
|
||||
/**
|
||||
* Register Verification settings.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
private static function register_verification_section(): void {
|
||||
register_setting( self::OPTION_GROUP, self::SCAN_CADENCE, [ 'type' => 'string', 'default' => 'weekly', 'sanitize_callback' => [ __CLASS__, 'sanitize_cadence' ] ] );
|
||||
register_setting( self::OPTION_GROUP, self::DEFAULT_THRESHOLD, [ 'type' => 'integer', 'default' => 180, 'sanitize_callback' => 'absint' ] );
|
||||
register_setting( self::OPTION_GROUP, self::HIGH_VELOCITY_THRESHOLD, [ 'type' => 'integer', 'default' => 60, 'sanitize_callback' => 'absint' ] );
|
||||
register_setting( self::OPTION_GROUP, self::VERIFICATION_EMAIL, [ 'type' => 'string', 'default' => '', 'sanitize_callback' => [ __CLASS__, 'sanitize_emails' ] ] );
|
||||
|
||||
add_settings_section( 'pr_core_verification', __( 'Verification', 'peptide-repo-core' ), [ __CLASS__, 'render_verification_section' ], self::OPTION_GROUP );
|
||||
add_settings_field( self::SCAN_CADENCE, __( 'Scan cadence', 'peptide-repo-core' ), [ __CLASS__, 'render_cadence_field' ], self::OPTION_GROUP, 'pr_core_verification' );
|
||||
add_settings_field( self::DEFAULT_THRESHOLD, __( 'Default staleness threshold (days)', 'peptide-repo-core' ), [ __CLASS__, 'render_threshold_field' ], self::OPTION_GROUP, 'pr_core_verification' );
|
||||
add_settings_field( self::HIGH_VELOCITY_THRESHOLD, __( 'High-velocity threshold (days)', 'peptide-repo-core' ), [ __CLASS__, 'render_high_velocity_field' ], self::OPTION_GROUP, 'pr_core_verification' );
|
||||
add_settings_field( self::VERIFICATION_EMAIL, __( 'Notification email(s)', 'peptide-repo-core' ), [ __CLASS__, 'render_email_field' ], self::OPTION_GROUP, 'pr_core_verification' );
|
||||
}
|
||||
|
||||
/** @return void */
|
||||
public static function render_verification_section(): void {
|
||||
echo '<p>' . esc_html__( 'Configure automatic staleness scanning and digest notifications.', 'peptide-repo-core' ) . '</p>';
|
||||
}
|
||||
|
||||
/** @return void */
|
||||
public static function render_cadence_field(): void {
|
||||
$current = get_option( self::SCAN_CADENCE, 'weekly' );
|
||||
echo '<select name="' . esc_attr( self::SCAN_CADENCE ) . '">';
|
||||
foreach ( [ 'daily' => 'Daily', 'weekly' => 'Weekly', 'monthly' => 'Monthly' ] as $val => $label ) {
|
||||
printf( '<option value="%s"%s>%s</option>', esc_attr( $val ), selected( $current, $val, false ), esc_html( $label ) );
|
||||
}
|
||||
echo '</select>';
|
||||
}
|
||||
|
||||
/** @return void */
|
||||
public static function render_threshold_field(): void {
|
||||
printf( '<input type="number" name="%s" value="%d" min="1" />', esc_attr( self::DEFAULT_THRESHOLD ), absint( get_option( self::DEFAULT_THRESHOLD, 180 ) ) );
|
||||
}
|
||||
|
||||
/** @return void */
|
||||
public static function render_high_velocity_field(): void {
|
||||
printf( '<input type="number" name="%s" value="%d" min="1" />', esc_attr( self::HIGH_VELOCITY_THRESHOLD ), absint( get_option( self::HIGH_VELOCITY_THRESHOLD, 60 ) ) );
|
||||
}
|
||||
|
||||
/** @return void */
|
||||
public static function render_email_field(): void {
|
||||
printf(
|
||||
'<input type="text" name="%s" value="%s" class="regular-text" placeholder="admin@example.com" />',
|
||||
esc_attr( self::VERIFICATION_EMAIL ),
|
||||
esc_attr( (string) get_option( self::VERIFICATION_EMAIL, '' ) )
|
||||
);
|
||||
echo '<p class="description">' . esc_html__( 'Comma-separated. Leave blank to disable email digests.', 'peptide-repo-core' ) . '</p>';
|
||||
}
|
||||
|
||||
/**
|
||||
* Sanitize cadence to allowed WP-cron recurrence values.
|
||||
*
|
||||
* @param string $value Raw input.
|
||||
* @return string
|
||||
*/
|
||||
public static function sanitize_cadence( string $value ): string {
|
||||
return in_array( $value, [ 'daily', 'weekly', 'monthly' ], true ) ? $value : 'weekly';
|
||||
}
|
||||
|
||||
/**
|
||||
* Sanitize comma-separated email list, keeping only valid addresses.
|
||||
*
|
||||
* @param string $value Raw input.
|
||||
* @return string
|
||||
*/
|
||||
public static function sanitize_emails( string $value ): string {
|
||||
if ( '' === $value ) {
|
||||
return '';
|
||||
}
|
||||
$valid = array_filter( array_map( 'trim', explode( ',', $value ) ), 'is_email' );
|
||||
return implode( ', ', $valid );
|
||||
}
|
||||
|
||||
/**
|
||||
* Reschedule the verification cron when cadence changes.
|
||||
*
|
||||
* Fires on: update_option_pr_core_scan_cadence.
|
||||
*
|
||||
* @param mixed $old_value Previous option value.
|
||||
* @param mixed $new_value New option value.
|
||||
* @return void
|
||||
*/
|
||||
public static function reschedule_cron( $old_value, $new_value ): void {
|
||||
if ( $old_value === $new_value ) {
|
||||
return;
|
||||
}
|
||||
wp_clear_scheduled_hook( 'pr_core_verification_scan' );
|
||||
wp_schedule_event( time(), (string) $new_value, 'pr_core_verification_scan' );
|
||||
}
|
||||
}
|
||||
|
||||
91
includes/admin/class-pr-core-verification-metabox.php
Normal file
91
includes/admin/class-pr-core-verification-metabox.php
Normal file
@@ -0,0 +1,91 @@
|
||||
<?php
|
||||
declare(strict_types=1);
|
||||
|
||||
/**
|
||||
* Verification status meta box for peptide edit screen.
|
||||
*
|
||||
* What: Renders and saves verification status sidebar meta box.
|
||||
* Who calls it: PR_Core_Admin via add_meta_boxes and save_post hooks.
|
||||
* Dependencies: None.
|
||||
*
|
||||
* @see admin/class-pr-core-peptide-metaboxes.php — Other edit-screen meta boxes.
|
||||
*/
|
||||
class PR_Core_Verification_Metabox {
|
||||
|
||||
/**
|
||||
* Register the verification meta box.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public static function register(): void {
|
||||
add_meta_box(
|
||||
'pr-core-verification',
|
||||
__( 'Verification Status', 'peptide-repo-core' ),
|
||||
[ __CLASS__, 'render' ],
|
||||
PR_Core_Peptide_CPT::POST_TYPE,
|
||||
'side',
|
||||
'default'
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Render the verification status meta box (sidebar).
|
||||
*
|
||||
* @param \WP_Post $post Current post.
|
||||
* @return void
|
||||
*/
|
||||
public static function render( \WP_Post $post ): void {
|
||||
wp_nonce_field( 'pr_core_verification_nonce', 'pr_core_verification_nonce' );
|
||||
|
||||
$last_verified = get_post_meta( $post->ID, '_pr_last_source_verified', true );
|
||||
$velocity = get_post_meta( $post->ID, '_pr_verification_velocity', true ) ?: 'medium';
|
||||
$status = get_post_meta( $post->ID, '_pr_verification_status', true ) ?: 'current';
|
||||
$notes = get_post_meta( $post->ID, '_pr_verification_notes', true ) ?: '';
|
||||
|
||||
echo '<p><strong>' . esc_html__( 'Last Verified', 'peptide-repo-core' ) . ':</strong><br />';
|
||||
echo '<code style="color: #666;">' . esc_html( $last_verified ?: '—' ) . '</code></p>';
|
||||
|
||||
echo '<p><strong>' . esc_html__( 'Verification Velocity', 'peptide-repo-core' ) . ':</strong><br />';
|
||||
echo '<select name="pr_core__pr_verification_velocity" style="width:100%;">';
|
||||
foreach ( [ 'low' => 'Low', 'medium' => 'Medium', 'high' => 'High' ] as $val => $label ) {
|
||||
printf(
|
||||
'<option value="%s"%s>%s</option>',
|
||||
esc_attr( $val ),
|
||||
selected( $velocity, $val, false ),
|
||||
esc_html( $label )
|
||||
);
|
||||
}
|
||||
echo '</select></p>';
|
||||
|
||||
echo '<p><strong>' . esc_html__( 'Status', 'peptide-repo-core' ) . ':</strong><br />';
|
||||
$badge_class = match( $status ) {
|
||||
'due' => 'style="background:#ff9800;color:white;padding:4px 8px;border-radius:3px;"',
|
||||
'overdue' => 'style="background:#f44336;color:white;padding:4px 8px;border-radius:3px;"',
|
||||
default => 'style="background:#4caf50;color:white;padding:4px 8px;border-radius:3px;"',
|
||||
};
|
||||
echo '<span ' . $badge_class . '>' . esc_html( ucfirst( $status ) ) . '</span></p>';
|
||||
|
||||
echo '<p><strong>' . esc_html__( 'Verification Notes', 'peptide-repo-core' ) . ':</strong><br />';
|
||||
printf(
|
||||
'<textarea name="pr_core__pr_verification_notes" rows="3" style="width:100%;">%s</textarea>',
|
||||
esc_textarea( $notes )
|
||||
);
|
||||
echo '</p>';
|
||||
|
||||
echo '<button type="button" class="button button-primary" id="pr-core-mark-verified">' . esc_html__( 'Mark Verified Today', 'peptide-repo-core' ) . '</button>';
|
||||
|
||||
echo '<script>
|
||||
document.getElementById("pr-core-mark-verified").addEventListener("click", function() {
|
||||
const data = new FormData();
|
||||
data.append("action", "pr_core_mark_verified");
|
||||
data.append("post_id", ' . (int) $post->ID . ');
|
||||
data.append("nonce", document.querySelector("[name=\'_wpnonce\']").value);
|
||||
data.append("notes", document.querySelector("[name=\'pr_core__pr_verification_notes\']").value);
|
||||
fetch(ajaxurl, { method: "POST", body: data })
|
||||
.then(r => r.json())
|
||||
.then(d => { if(d.success) { location.reload(); } else { alert("Error: " + (d.data || "Unknown")); }})
|
||||
.catch(e => { alert("Error: " + e); });
|
||||
});
|
||||
</script>';
|
||||
}
|
||||
}
|
||||
113
includes/admin/class-pr-core-verification-widget.php
Normal file
113
includes/admin/class-pr-core-verification-widget.php
Normal file
@@ -0,0 +1,113 @@
|
||||
<?php
|
||||
declare(strict_types=1);
|
||||
|
||||
/**
|
||||
* Dashboard widget for verification status overview.
|
||||
*
|
||||
* What: WordPress dashboard widget showing peptides needing review (due/overdue).
|
||||
* Who calls it: PR_Core::init() hooks wp_dashboard_setup.
|
||||
* Dependencies: PR_Core_Peptide_Repository.
|
||||
*
|
||||
* @see scanner/class-pr-core-verification-scanner.php — Computes status via run_scan().
|
||||
*/
|
||||
class PR_Core_Verification_Widget {
|
||||
|
||||
/**
|
||||
* Register the dashboard widget.
|
||||
*
|
||||
* Side effects: Registers WP dashboard widget.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public static function register(): void {
|
||||
wp_add_dashboard_widget(
|
||||
'pr_core_verification_status',
|
||||
__( 'Monographs Needing Review', 'peptide-repo-core' ),
|
||||
[ __CLASS__, 'render' ]
|
||||
);
|
||||
}
|
||||
|
||||
/**
|
||||
* Render the widget content.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public static function render(): void {
|
||||
$repo = new PR_Core_Peptide_Repository();
|
||||
$peptides = $repo->find_all( [ 'status' => 'publish' ] );
|
||||
|
||||
$due_overdue = [];
|
||||
|
||||
foreach ( $peptides as $dto ) {
|
||||
$status = get_post_meta( $dto->id, '_pr_verification_status', true ) ?: 'current';
|
||||
|
||||
if ( in_array( $status, [ 'due', 'overdue' ], true ) ) {
|
||||
$last_verified = get_post_meta( $dto->id, '_pr_last_source_verified', true );
|
||||
$days_since = $last_verified
|
||||
? (int) ( ( time() - strtotime( $last_verified ) ) / DAY_IN_SECONDS )
|
||||
: 999;
|
||||
|
||||
$due_overdue[] = [
|
||||
'id' => $dto->id,
|
||||
'title' => $dto->title,
|
||||
'status' => $status,
|
||||
'velocity' => get_post_meta( $dto->id, '_pr_verification_velocity', true ) ?: 'medium',
|
||||
'last_verified' => $last_verified,
|
||||
'days_since' => $days_since,
|
||||
];
|
||||
}
|
||||
}
|
||||
|
||||
// Sort by days_since descending (most overdue first).
|
||||
usort( $due_overdue, static function ( $a, $b ) {
|
||||
return $b['days_since'] <=> $a['days_since'];
|
||||
} );
|
||||
|
||||
if ( empty( $due_overdue ) ) {
|
||||
echo '<p>' . esc_html__( 'All monographs are current. ', 'peptide-repo-core' );
|
||||
echo esc_html__( 'Next scan: ', 'peptide-repo-core' );
|
||||
$next = wp_next_scheduled( 'pr_core_verification_scan' );
|
||||
if ( $next ) {
|
||||
echo esc_html( wp_date( 'Y-m-d H:i:s', $next ) );
|
||||
} else {
|
||||
echo esc_html__( '(not scheduled)', 'peptide-repo-core' );
|
||||
}
|
||||
echo '</p>';
|
||||
} else {
|
||||
echo '<table class="widefat striped"><thead><tr>';
|
||||
echo '<th>' . esc_html__( 'Title', 'peptide-repo-core' ) . '</th>';
|
||||
echo '<th>' . esc_html__( 'Verdict', 'peptide-repo-core' ) . '</th>';
|
||||
echo '<th>' . esc_html__( 'Velocity', 'peptide-repo-core' ) . '</th>';
|
||||
echo '<th>' . esc_html__( 'Last Verified', 'peptide-repo-core' ) . '</th>';
|
||||
echo '<th>' . esc_html__( 'Days Overdue', 'peptide-repo-core' ) . '</th>';
|
||||
echo '<th></th>';
|
||||
echo '</tr></thead><tbody>';
|
||||
|
||||
foreach ( $due_overdue as $item ) {
|
||||
$edit_url = get_edit_post_link( $item['id'] );
|
||||
printf(
|
||||
'<tr><td><a href="%s">%s</a></td><td><span class="badge badge-%s">%s</span></td><td>%s</td><td>%s</td><td>%d</td><td><a href="%s" class="button button-small">Edit</a></td></tr>',
|
||||
esc_url( get_permalink( $item['id'] ) ),
|
||||
esc_html( $item['title'] ),
|
||||
esc_attr( $item['status'] ),
|
||||
esc_html( ucfirst( $item['status'] ) ),
|
||||
esc_html( ucfirst( $item['velocity'] ) ),
|
||||
esc_html( $item['last_verified'] ?? '—' ),
|
||||
$item['days_since'],
|
||||
esc_url( $edit_url )
|
||||
);
|
||||
}
|
||||
|
||||
echo '</tbody></table>';
|
||||
}
|
||||
|
||||
echo '<p>';
|
||||
$nonce = wp_create_nonce( 'pr_core_scan_now' );
|
||||
printf(
|
||||
'<form method="post" style="display:inline;"><input type="hidden" name="action" value="pr_core_scan_now" /><input type="hidden" name="nonce" value="%s" /><button type="submit" class="button button-primary">%s</button></form>',
|
||||
esc_attr( $nonce ),
|
||||
esc_html__( 'Scan Now', 'peptide-repo-core' )
|
||||
);
|
||||
echo '</p>';
|
||||
}
|
||||
}
|
||||
@@ -21,6 +21,10 @@ class PR_Core_Deactivator {
|
||||
* @return void
|
||||
*/
|
||||
public static function deactivate(): void {
|
||||
// Clear verification scan cron.
|
||||
wp_clear_scheduled_hook( 'pr_core_verification_scan' );
|
||||
|
||||
// Flush rewrite rules.
|
||||
flush_rewrite_rules();
|
||||
}
|
||||
}
|
||||
|
||||
@@ -41,13 +41,30 @@ class PR_Core {
|
||||
// without a deactivate/reactivate cycle (e.g., SCP/rsync pushes).
|
||||
add_action( 'init', [ PR_Core_Activator::class, 'maybe_flush_on_version_change' ], 999 );
|
||||
|
||||
// Verification scanner: register cron hook and schedule if not already scheduled.
|
||||
if ( ! wp_next_scheduled( 'pr_core_verification_scan' ) ) {
|
||||
wp_schedule_event( time(), get_option( 'pr_core_scan_cadence', 'weekly' ), 'pr_core_verification_scan' );
|
||||
}
|
||||
add_action( 'pr_core_verification_scan', [ PR_Core_Verification_Scanner::class, 'run_scan' ] );
|
||||
|
||||
// Ajax handlers must be registered outside is_admin() — admin-ajax.php
|
||||
// does not define WP_ADMIN, so is_admin() returns false for ajax requests.
|
||||
add_action( 'wp_ajax_pr_core_mark_verified', [ PR_Core_Ajax_Handlers::class, 'handle_mark_verified' ] );
|
||||
add_action( 'wp_ajax_pr_core_scan_now', [ PR_Core_Ajax_Handlers::class, 'handle_scan_now' ] );
|
||||
|
||||
// Admin UI (fires on admin_init, admin_menu).
|
||||
if ( is_admin() ) {
|
||||
add_action( 'admin_menu', [ PR_Core_Settings::class, 'add_settings_page' ] );
|
||||
add_action( 'admin_init', [ PR_Core_Settings::class, 'register_settings' ] );
|
||||
add_action( 'wp_dashboard_setup', [ PR_Core_Verification_Widget::class, 'register' ] );
|
||||
|
||||
$admin = new PR_Core_Admin();
|
||||
$admin->register_hooks();
|
||||
}
|
||||
|
||||
// Frontend: disclaimer shortcode + JSON-LD.
|
||||
// Frontend: disclaimer shortcode + JSON-LD + verification display.
|
||||
PR_Core_Verification_Display::init();
|
||||
|
||||
$disclaimer = new PR_Core_Disclaimer();
|
||||
$disclaimer->register_hooks();
|
||||
|
||||
|
||||
@@ -2,22 +2,18 @@
|
||||
declare(strict_types=1);
|
||||
|
||||
/**
|
||||
* Registers the peptide custom post type and associated taxonomies.
|
||||
* Registers the peptide custom post type and associated taxonomy.
|
||||
*
|
||||
* What: Defines the peptide CPT with REST support, archive, and monograph meta fields.
|
||||
* Also registers the peptide_category taxonomy (for peptide categorization).
|
||||
* What: Defines peptide CPT with REST support, archive, and meta fields.
|
||||
* Who calls it: PR_Core::init() on plugins_loaded.
|
||||
* Dependencies: None.
|
||||
*
|
||||
* Ownership: As of v0.2.0, PR Core is the canonical owner of the `peptide` CPT
|
||||
* and `peptide_category` taxonomy (previously registered by Peptide Search AI
|
||||
* pre-schema-sprint; PSA v4.5.0 drops its registrations in favor of this one).
|
||||
* Registration is guarded by `post_type_exists()` / `taxonomy_exists()` so
|
||||
* deploy order between the two plugins does not matter — whichever runs first
|
||||
* wins, the other no-ops.
|
||||
* Ownership: As of v0.2.0, PR Core owns the `peptide` CPT and `peptide_category` taxonomy
|
||||
* (previously PSA v4.5.0). Registration guarded by post_type_exists/taxonomy_exists
|
||||
* so deploy order does not matter.
|
||||
*
|
||||
* @see ARCHITECTURE.md — CPT specification and post-meta field definitions.
|
||||
* @see CONVENTIONS.md — CPT ownership rule (no plugin registers a CPT another plugin owns).
|
||||
* @see ARCHITECTURE.md
|
||||
* @see CONVENTIONS.md
|
||||
*/
|
||||
class PR_Core_Peptide_CPT {
|
||||
|
||||
@@ -119,6 +115,36 @@ class PR_Core_Peptide_CPT {
|
||||
'default' => 0,
|
||||
'sanitize' => 'absint',
|
||||
],
|
||||
'_pr_last_source_verified' => [
|
||||
'type' => 'string',
|
||||
'default' => '',
|
||||
'sanitize' => 'sanitize_text_field',
|
||||
],
|
||||
'_pr_last_reviewed' => [
|
||||
'type' => 'string',
|
||||
'default' => '',
|
||||
'sanitize' => 'sanitize_text_field',
|
||||
],
|
||||
'_pr_next_review_by' => [
|
||||
'type' => 'string',
|
||||
'default' => '',
|
||||
'sanitize' => 'sanitize_text_field',
|
||||
],
|
||||
'_pr_verification_velocity' => [
|
||||
'type' => 'string',
|
||||
'default' => 'medium',
|
||||
'sanitize' => [ PR_Core_Verification_Sanitizers::class, 'sanitize_velocity' ],
|
||||
],
|
||||
'_pr_verification_notes' => [
|
||||
'type' => 'string',
|
||||
'default' => '',
|
||||
'sanitize' => 'sanitize_textarea_field',
|
||||
],
|
||||
'_pr_verification_status' => [
|
||||
'type' => 'string',
|
||||
'default' => 'current',
|
||||
'sanitize' => [ PR_Core_Verification_Sanitizers::class, 'sanitize_status' ],
|
||||
],
|
||||
];
|
||||
}
|
||||
|
||||
@@ -164,17 +190,8 @@ class PR_Core_Peptide_CPT {
|
||||
'menu_name' => __( 'Peptides', 'peptide-repo-core' ),
|
||||
];
|
||||
|
||||
/*
|
||||
* Args are a harmonized superset of PR Core's prior `pr_peptide` args
|
||||
* and PSA's `peptide` args, so the 89 existing posts (authored under
|
||||
* PSA's registration) keep every capability they relied on:
|
||||
* - supports: union of both — thumbnail comes from PSA, revisions +
|
||||
* custom-fields come from PR Core.
|
||||
* - capability_type + map_meta_cap: preserve PSA's per-role perms.
|
||||
* - rewrite slug `peptides`: unchanged from both plugins, so
|
||||
* /peptides/%postname%/ URLs keep working and theme templates
|
||||
* single-peptide.php / archive-peptide.php continue to match.
|
||||
*/
|
||||
// Args harmonized superset of PR Core + PSA for 89 existing posts.
|
||||
// Supports union, capability/role perms preserved, slugs unchanged.
|
||||
$args = [
|
||||
'labels' => $labels,
|
||||
'public' => true,
|
||||
@@ -184,8 +201,10 @@ class PR_Core_Peptide_CPT {
|
||||
'show_in_nav_menus' => true,
|
||||
'show_in_rest' => true,
|
||||
'rest_base' => 'peptides',
|
||||
// 'rest_namespace' omitted — custom namespaces break Gutenberg
|
||||
// (it fetches wp/v2 hardcoded). WordPress defaults to wp/v2. (#5)
|
||||
// Note: 'rest_namespace' is deliberately omitted. Custom namespaces prevent
|
||||
// Gutenberg's block editor from loading posts for editing (it fetches the
|
||||
// hardcoded wp/v2 REST route). WordPress defaults to wp/v2 — appropriate for
|
||||
// this CPT — and keeps the REST endpoint at /wp-json/wp/v2/peptides/.
|
||||
'menu_position' => 25,
|
||||
'menu_icon' => 'dashicons-database',
|
||||
'capability_type' => 'post',
|
||||
@@ -195,7 +214,6 @@ class PR_Core_Peptide_CPT {
|
||||
'rewrite' => [ 'slug' => 'peptides', 'with_front' => false ],
|
||||
'supports' => [ 'title', 'editor', 'thumbnail', 'excerpt', 'revisions', 'custom-fields' ],
|
||||
];
|
||||
|
||||
register_post_type( self::POST_TYPE, $args );
|
||||
}
|
||||
|
||||
@@ -203,36 +221,35 @@ class PR_Core_Peptide_CPT {
|
||||
* Register the `peptide_category` taxonomy.
|
||||
*
|
||||
* Guarded with `taxonomy_exists()` for the same reason CPT registration
|
||||
* is guarded. The 8 existing category terms + term_relationships stay intact —
|
||||
* is guarded. The 8 existing terms + term_relationships stay intact —
|
||||
* they key on taxonomy name `peptide_category` in wp_term_taxonomy,
|
||||
* which is exactly what we register here.
|
||||
*
|
||||
* v0.2.0: `pr_peptide_family` taxonomy removed — never populated, never
|
||||
* surfaced in UI.
|
||||
*
|
||||
* v0.3.0: `peptide_topic` taxonomy moved to PR_Core_Topic_Taxonomy class.
|
||||
*
|
||||
* Side effects: registers taxonomy with WordPress.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public static function register_taxonomies(): void {
|
||||
// Register peptide_category taxonomy.
|
||||
if ( ! taxonomy_exists( self::TAX_CATEGORY ) ) {
|
||||
register_taxonomy( self::TAX_CATEGORY, self::POST_TYPE, [
|
||||
'labels' => [
|
||||
'name' => __( 'Peptide Categories', 'peptide-repo-core' ),
|
||||
'singular_name' => __( 'Peptide Category', 'peptide-repo-core' ),
|
||||
],
|
||||
'public' => true,
|
||||
'publicly_queryable' => true,
|
||||
'show_in_rest' => true,
|
||||
'show_ui' => true,
|
||||
'show_admin_column' => true,
|
||||
'hierarchical' => true,
|
||||
'rewrite' => [ 'slug' => 'peptide-category', 'with_front' => false ],
|
||||
] );
|
||||
if ( taxonomy_exists( self::TAX_CATEGORY ) ) {
|
||||
return;
|
||||
}
|
||||
|
||||
register_taxonomy( self::TAX_CATEGORY, self::POST_TYPE, [
|
||||
'labels' => [
|
||||
'name' => __( 'Peptide Categories', 'peptide-repo-core' ),
|
||||
'singular_name' => __( 'Peptide Category', 'peptide-repo-core' ),
|
||||
],
|
||||
'public' => true,
|
||||
'publicly_queryable' => true,
|
||||
'show_in_rest' => true,
|
||||
'show_ui' => true,
|
||||
'show_admin_column' => true,
|
||||
'hierarchical' => true,
|
||||
'rewrite' => [ 'slug' => 'peptide-category', 'with_front' => false ],
|
||||
] );
|
||||
}
|
||||
|
||||
/**
|
||||
@@ -255,12 +272,7 @@ class PR_Core_Peptide_CPT {
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Sanitize a JSON array string (e.g., aliases field).
|
||||
*
|
||||
* @param mixed $value Raw input.
|
||||
* @return string Valid JSON array string.
|
||||
*/
|
||||
/** Sanitize a JSON array string (e.g., aliases field). */
|
||||
public static function sanitize_json_array( $value ): string {
|
||||
if ( is_array( $value ) ) {
|
||||
$value = wp_json_encode( array_map( 'sanitize_text_field', $value ) );
|
||||
@@ -274,23 +286,13 @@ class PR_Core_Peptide_CPT {
|
||||
return wp_json_encode( array_values( array_map( 'sanitize_text_field', $decoded ) ) );
|
||||
}
|
||||
|
||||
/**
|
||||
* Sanitize evidence_strength to allowed enum values.
|
||||
*
|
||||
* @param mixed $value Raw input.
|
||||
* @return string Valid enum value.
|
||||
*/
|
||||
/** Sanitize evidence_strength to allowed enum values. */
|
||||
public static function sanitize_evidence_strength( $value ): string {
|
||||
$value = sanitize_text_field( (string) $value );
|
||||
return in_array( $value, self::EVIDENCE_STRENGTHS, true ) ? $value : 'preclinical';
|
||||
}
|
||||
|
||||
/**
|
||||
* Sanitize editorial_review_status to allowed enum values.
|
||||
*
|
||||
* @param mixed $value Raw input.
|
||||
* @return string Valid enum value.
|
||||
*/
|
||||
/** Sanitize editorial_review_status to allowed enum values. */
|
||||
public static function sanitize_review_status( $value ): string {
|
||||
$value = sanitize_text_field( (string) $value );
|
||||
return in_array( $value, self::REVIEW_STATUSES, true ) ? $value : 'draft';
|
||||
|
||||
34
includes/cpt/class-pr-core-verification-sanitizers.php
Normal file
34
includes/cpt/class-pr-core-verification-sanitizers.php
Normal file
@@ -0,0 +1,34 @@
|
||||
<?php
|
||||
declare(strict_types=1);
|
||||
|
||||
/**
|
||||
* Sanitizers for verification meta fields.
|
||||
*
|
||||
* What: Standalone sanitization functions for verification_velocity and verification_status fields.
|
||||
* Who calls it: PR_Core_Peptide_CPT::get_meta_fields() sanitize callbacks.
|
||||
* Dependencies: None.
|
||||
*
|
||||
* @see cpt/class-pr-core-peptide-cpt.php — Calls these from meta field registration.
|
||||
*/
|
||||
class PR_Core_Verification_Sanitizers {
|
||||
|
||||
/**
|
||||
* Sanitize verification_velocity to allowed enum values.
|
||||
*
|
||||
* @param string $value Raw input.
|
||||
* @return string Valid enum value (low, medium, high).
|
||||
*/
|
||||
public static function sanitize_velocity( string $value ): string {
|
||||
return in_array( $value, [ 'low', 'medium', 'high' ], true ) ? $value : 'medium';
|
||||
}
|
||||
|
||||
/**
|
||||
* Sanitize verification_status to allowed enum values.
|
||||
*
|
||||
* @param string $value Raw input.
|
||||
* @return string Valid enum value (current, due, overdue).
|
||||
*/
|
||||
public static function sanitize_status( string $value ): string {
|
||||
return in_array( $value, [ 'current', 'due', 'overdue' ], true ) ? $value : 'current';
|
||||
}
|
||||
}
|
||||
81
includes/frontend/class-pr-core-verification-display.php
Normal file
81
includes/frontend/class-pr-core-verification-display.php
Normal file
@@ -0,0 +1,81 @@
|
||||
<?php
|
||||
declare(strict_types=1);
|
||||
|
||||
/**
|
||||
* Frontend verification date display on peptide single pages.
|
||||
*
|
||||
* What: Appends last-verified date after verdict card on reader-facing pages.
|
||||
* Who calls it: PR_Core::init() hooks the_content filter.
|
||||
* Dependencies: None (hooked via the_content).
|
||||
*
|
||||
* @see includes/class-pr-core.php — Registers the_content hook.
|
||||
*/
|
||||
class PR_Core_Verification_Display {
|
||||
|
||||
/**
|
||||
* Initialize frontend hooks.
|
||||
*
|
||||
* Side effects: Registers the_content filter.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public static function init(): void {
|
||||
add_filter( 'the_content', [ __CLASS__, 'append_verification_display' ], 20 );
|
||||
}
|
||||
|
||||
/**
|
||||
* Append verification display after verdict card.
|
||||
*
|
||||
* @param string $content The post content.
|
||||
* @return string Modified content.
|
||||
*/
|
||||
public static function append_verification_display( string $content ): string {
|
||||
// Only on peptide CPT, not in admin.
|
||||
if ( is_admin() || ! is_singular( PR_Core_Peptide_CPT::POST_TYPE ) ) {
|
||||
return $content;
|
||||
}
|
||||
|
||||
$post_id = get_the_ID();
|
||||
if ( ! $post_id ) {
|
||||
return $content;
|
||||
}
|
||||
|
||||
// Only if _pr_last_source_verified is set.
|
||||
$last_verified = get_post_meta( $post_id, '_pr_last_source_verified', true );
|
||||
if ( empty( $last_verified ) ) {
|
||||
return $content;
|
||||
}
|
||||
|
||||
// Find the verdict card closing div and append after it.
|
||||
$verdict_close = '</div><!-- .pr-verdict -->';
|
||||
if ( strpos( $content, $verdict_close ) !== false ) {
|
||||
$display = self::render_verification_block( $last_verified );
|
||||
$content = str_replace( $verdict_close, $verdict_close . $display, $content );
|
||||
}
|
||||
|
||||
return $content;
|
||||
}
|
||||
|
||||
/**
|
||||
* Render the verification block HTML.
|
||||
*
|
||||
* @param string $last_verified ISO date string.
|
||||
* @return string HTML block.
|
||||
*/
|
||||
private static function render_verification_block( string $last_verified ): string {
|
||||
$date_obj = new \DateTime( $last_verified );
|
||||
$formatted_date = $date_obj->format( get_option( 'date_format' ) );
|
||||
|
||||
$html = '<p class="pr-verification-date">';
|
||||
$html .= esc_html__( 'Last verified: ', 'peptide-repo-core' );
|
||||
$html .= sprintf(
|
||||
'<time datetime="%s">%s</time>',
|
||||
esc_attr( $date_obj->format( 'Y-m-d' ) ),
|
||||
esc_html( $formatted_date )
|
||||
);
|
||||
$html .= ' — <a href="' . esc_url( home_url( '/our-methodology/' ) ) . '">' . esc_html__( 'methodology', 'peptide-repo-core' ) . '</a>';
|
||||
$html .= '</p>';
|
||||
|
||||
return $html;
|
||||
}
|
||||
}
|
||||
199
includes/scanner/class-pr-core-verification-scanner.php
Normal file
199
includes/scanner/class-pr-core-verification-scanner.php
Normal file
@@ -0,0 +1,199 @@
|
||||
<?php
|
||||
declare(strict_types=1);
|
||||
|
||||
/**
|
||||
* Verification scanner for peptide monographs.
|
||||
*
|
||||
* What: Runs periodic scans of all published peptides, computes verification status
|
||||
* (current/due/overdue), logs results, and sends digest notifications.
|
||||
* Who calls it: PR_Core::init() hooks wp_schedule_event; runs via wp_cron.
|
||||
* Dependencies: PR_Core_Peptide_Repository, wp_mail().
|
||||
*
|
||||
* @see admin/class-pr-core-settings.php — Cadence and threshold settings.
|
||||
* @see cpt/class-pr-core-peptide-cpt.php — Verification meta field specs.
|
||||
*/
|
||||
class PR_Core_Verification_Scanner {
|
||||
|
||||
const DEFAULT_THRESHOLD_DAYS = 180;
|
||||
const HIGH_VELOCITY_THRESHOLD = 60;
|
||||
const LOW_VELOCITY_THRESHOLD = 365;
|
||||
const SCAN_LOG_OPTION_KEY = 'pr_core_verification_scan_log';
|
||||
const MAX_LOG_ENTRIES = 90;
|
||||
|
||||
/**
|
||||
* Run verification scan on all published peptides.
|
||||
*
|
||||
* Side effects: Updates _pr_verification_status, appends to scan log, sends email.
|
||||
*
|
||||
* @return void
|
||||
*/
|
||||
public static function run_scan(): void {
|
||||
$repo = new PR_Core_Peptide_Repository();
|
||||
$peptides = $repo->find_all( [ 'status' => 'publish' ] );
|
||||
|
||||
$due_peptides = [];
|
||||
$overdue_peptides = [];
|
||||
|
||||
foreach ( $peptides as $dto ) {
|
||||
$last_verified = get_post_meta( $dto->id, '_pr_last_source_verified', true );
|
||||
$velocity = get_post_meta( $dto->id, '_pr_verification_velocity', true ) ?: 'medium';
|
||||
|
||||
// Empty verified date = treat as overdue.
|
||||
if ( empty( $last_verified ) ) {
|
||||
update_post_meta( $dto->id, '_pr_verification_status', 'overdue' );
|
||||
$overdue_peptides[] = $dto;
|
||||
continue;
|
||||
}
|
||||
|
||||
// Delegate to compute_status() — keeps logic testable without DB calls.
|
||||
$status = self::compute_status( $last_verified, $velocity );
|
||||
|
||||
update_post_meta( $dto->id, '_pr_verification_status', $status );
|
||||
|
||||
if ( 'due' === $status ) {
|
||||
$due_peptides[] = $dto;
|
||||
} elseif ( 'overdue' === $status ) {
|
||||
$overdue_peptides[] = $dto;
|
||||
}
|
||||
}
|
||||
|
||||
// Log the scan result.
|
||||
self::log_scan( count( $peptides ), count( $due_peptides ), count( $overdue_peptides ) );
|
||||
|
||||
// Send digest email if configured and there are items needing review.
|
||||
if ( ! empty( $due_peptides ) || ! empty( $overdue_peptides ) ) {
|
||||
self::send_digest_email( $due_peptides, $overdue_peptides );
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Compute verification status for a single peptide.
|
||||
*
|
||||
* Extracted for direct unit-testability without database or WP-cron dependencies.
|
||||
*
|
||||
* @param string $last_verified YYYY-MM-DD date of last source verification. Empty = overdue.
|
||||
* @param string $velocity Velocity tier: high | medium | low.
|
||||
* @return string Status: current | due | overdue.
|
||||
*/
|
||||
public static function compute_status( string $last_verified, string $velocity ): string {
|
||||
if ( empty( $last_verified ) ) {
|
||||
return 'overdue';
|
||||
}
|
||||
|
||||
$days_since = ( time() - strtotime( $last_verified ) ) / DAY_IN_SECONDS;
|
||||
$threshold = match ( $velocity ) {
|
||||
'high' => (int) get_option( 'pr_core_high_velocity_threshold', self::HIGH_VELOCITY_THRESHOLD ),
|
||||
'low' => self::LOW_VELOCITY_THRESHOLD,
|
||||
default => (int) get_option( 'pr_core_default_threshold', self::DEFAULT_THRESHOLD_DAYS ),
|
||||
};
|
||||
|
||||
return $days_since < ( $threshold * 0.9 )
|
||||
? 'current'
|
||||
: ( $days_since < $threshold ? 'due' : 'overdue' );
|
||||
}
|
||||
|
||||
/**
|
||||
* Log scan summary to WP option, keeping last N entries.
|
||||
*
|
||||
* @param int $total Total peptides scanned.
|
||||
* @param int $due Count of due peptides.
|
||||
* @param int $overdue Count of overdue peptides.
|
||||
* @return void
|
||||
*/
|
||||
private static function log_scan( int $total, int $due, int $overdue ): void {
|
||||
$log = get_option( self::SCAN_LOG_OPTION_KEY, [] );
|
||||
if ( ! is_array( $log ) ) {
|
||||
$log = [];
|
||||
}
|
||||
|
||||
$log[] = [
|
||||
'timestamp' => current_time( 'mysql' ),
|
||||
'total' => $total,
|
||||
'due' => $due,
|
||||
'overdue' => $overdue,
|
||||
];
|
||||
|
||||
// Keep only the last MAX_LOG_ENTRIES.
|
||||
if ( count( $log ) > self::MAX_LOG_ENTRIES ) {
|
||||
$log = array_slice( $log, -self::MAX_LOG_ENTRIES );
|
||||
}
|
||||
|
||||
update_option( self::SCAN_LOG_OPTION_KEY, $log );
|
||||
}
|
||||
|
||||
/**
|
||||
* Send digest email to configured recipient(s).
|
||||
*
|
||||
* @param array<PR_Core_Peptide_DTO> $due_peptides Peptides due for review.
|
||||
* @param array<PR_Core_Peptide_DTO> $overdue_peptides Peptides overdue for review.
|
||||
* @return void
|
||||
*/
|
||||
private static function send_digest_email( array $due_peptides, array $overdue_peptides ): void {
|
||||
$recipients = get_option( 'pr_core_verification_email', '' );
|
||||
if ( empty( $recipients ) ) {
|
||||
return;
|
||||
}
|
||||
|
||||
// Parse comma-separated emails.
|
||||
$emails = array_map( 'trim', explode( ',', $recipients ) );
|
||||
$emails = array_filter( $emails, static function ( $email ) {
|
||||
return is_email( $email );
|
||||
} );
|
||||
|
||||
if ( empty( $emails ) ) {
|
||||
return;
|
||||
}
|
||||
|
||||
$subject = sprintf(
|
||||
'[Peptide Repo] Verification digest: %d due, %d overdue',
|
||||
count( $due_peptides ),
|
||||
count( $overdue_peptides )
|
||||
);
|
||||
|
||||
$body = self::build_email_body( $due_peptides, $overdue_peptides );
|
||||
|
||||
wp_mail( $emails, $subject, $body, [ 'Content-Type: text/html; charset=UTF-8' ] );
|
||||
}
|
||||
|
||||
/**
|
||||
* Build HTML email body for digest.
|
||||
*
|
||||
* @param array<PR_Core_Peptide_DTO> $due_peptides Peptides due for review.
|
||||
* @param array<PR_Core_Peptide_DTO> $overdue_peptides Peptides overdue for review.
|
||||
* @return string HTML email body.
|
||||
*/
|
||||
private static function build_email_body( array $due_peptides, array $overdue_peptides ): string {
|
||||
$body = '<h2>Verification Digest</h2>';
|
||||
|
||||
if ( ! empty( $overdue_peptides ) ) {
|
||||
$body .= '<h3>Overdue for review (' . count( $overdue_peptides ) . ')</h3><ul>';
|
||||
foreach ( $overdue_peptides as $dto ) {
|
||||
$edit_url = get_edit_post_link( $dto->id );
|
||||
$body .= sprintf(
|
||||
'<li><a href="%s">%s</a></li>',
|
||||
esc_url( $edit_url ),
|
||||
esc_html( $dto->title )
|
||||
);
|
||||
}
|
||||
$body .= '</ul>';
|
||||
}
|
||||
|
||||
if ( ! empty( $due_peptides ) ) {
|
||||
$body .= '<h3>Due for review (' . count( $due_peptides ) . ')</h3><ul>';
|
||||
foreach ( $due_peptides as $dto ) {
|
||||
$edit_url = get_edit_post_link( $dto->id );
|
||||
$body .= sprintf(
|
||||
'<li><a href="%s">%s</a></li>',
|
||||
esc_url( $edit_url ),
|
||||
esc_html( $dto->title )
|
||||
);
|
||||
}
|
||||
$body .= '</ul>';
|
||||
}
|
||||
|
||||
$body .= '<p><a href="' . esc_url( admin_url( 'index.php?page=pr-core-verification' ) ) . '">View verification dashboard</a></p>';
|
||||
|
||||
return $body;
|
||||
}
|
||||
}
|
||||
@@ -3,7 +3,7 @@
|
||||
* Plugin Name: Peptide Repo Core
|
||||
* Plugin URI: https://peptiderepo.com
|
||||
* Description: Canonical peptide schema — shared data layer for the peptiderepo.com ecosystem. Provides the peptide CPT, dosing rows, legal status cells, AI candidate queue, disclaimer component, and JSON-LD output.
|
||||
* Version: 0.3.2
|
||||
* Version: 0.4.0
|
||||
* Author: peptiderepo
|
||||
* Author URI: https://peptiderepo.com
|
||||
* License: GPL-2.0-or-later
|
||||
@@ -22,7 +22,7 @@ if ( ! defined( 'ABSPATH' ) ) {
|
||||
|
||||
/* ── Constants ────────────────────────────────────────────────────────── */
|
||||
|
||||
define( 'PR_CORE_VERSION', '0.3.2' );
|
||||
define( 'PR_CORE_VERSION', '0.4.0' );
|
||||
define( 'PR_CORE_PLUGIN_FILE', __FILE__ );
|
||||
define( 'PR_CORE_PLUGIN_DIR', plugin_dir_path( __FILE__ ) );
|
||||
define( 'PR_CORE_PLUGIN_URL', plugin_dir_url( __FILE__ ) );
|
||||
|
||||
128
tests/unit/test-verification-scanner.php
Normal file
128
tests/unit/test-verification-scanner.php
Normal file
@@ -0,0 +1,128 @@
|
||||
<?php
|
||||
/**
|
||||
* Unit tests for PR_Core_Verification_Scanner::compute_status().
|
||||
*
|
||||
* Run: php tests/unit/test-verification-scanner.php
|
||||
* Exit code 0 = all pass, 1 = any failure.
|
||||
*
|
||||
* What's covered:
|
||||
* - Empty last_verified → overdue.
|
||||
* - Days < 90% of threshold → current.
|
||||
* - Days >= 90% and < 100% of threshold → due.
|
||||
* - Days >= threshold → overdue.
|
||||
* - Boundary: exactly at 90% → due (not current).
|
||||
* - high velocity applies 60-day threshold from option.
|
||||
* - low velocity applies 365-day constant (not option).
|
||||
* - medium/default applies 180-day threshold from option.
|
||||
*
|
||||
* @package PeptideRepoCore
|
||||
*/
|
||||
|
||||
declare(strict_types=1);
|
||||
|
||||
require_once __DIR__ . '/../bootstrap.php';
|
||||
|
||||
// ── Additional stubs needed by the scanner ──────────────────────────────
|
||||
|
||||
if ( ! defined( 'DAY_IN_SECONDS' ) ) {
|
||||
define( 'DAY_IN_SECONDS', 86400 );
|
||||
}
|
||||
|
||||
/** @var array<string, mixed> $GLOBALS['pr_core_options'] Mocked option store. */
|
||||
$GLOBALS['pr_core_options'] = [];
|
||||
|
||||
if ( ! function_exists( 'get_option' ) ) {
|
||||
function get_option( string $key, $default = false ) {
|
||||
return $GLOBALS['pr_core_options'][ $key ] ?? $default;
|
||||
}
|
||||
}
|
||||
|
||||
// ── Load the scanner class ──────────────────────────────────────────────
|
||||
|
||||
require_once __DIR__ . '/../../includes/scanner/class-pr-core-verification-scanner.php';
|
||||
|
||||
// ── Helper: build a date N days ago ────────────────────────────────────
|
||||
|
||||
function days_ago( int $days ): string {
|
||||
return gmdate( 'Y-m-d', time() - ( $days * DAY_IN_SECONDS ) );
|
||||
}
|
||||
|
||||
echo "== PR_Core_Verification_Scanner::compute_status() unit tests ==\n\n";
|
||||
|
||||
// ── Empty last_verified ─────────────────────────────────────────────────
|
||||
|
||||
echo "Empty last_verified:\n";
|
||||
pr_assert_equals(
|
||||
'overdue',
|
||||
PR_Core_Verification_Scanner::compute_status( '', 'medium' ),
|
||||
'empty string → overdue'
|
||||
);
|
||||
|
||||
// ── Medium velocity (default 180-day threshold) ─────────────────────────
|
||||
|
||||
echo "\nMedium velocity (threshold=180, option default):\n";
|
||||
$GLOBALS['pr_core_options'] = [];
|
||||
|
||||
// 160 days ago → 160 < 162 (90% of 180) → current.
|
||||
pr_assert_equals( 'current', PR_Core_Verification_Scanner::compute_status( days_ago( 160 ), 'medium' ), '160 days → current' );
|
||||
|
||||
// 163 days ago → 163 >= 162 and < 180 → due.
|
||||
pr_assert_equals( 'due', PR_Core_Verification_Scanner::compute_status( days_ago( 163 ), 'medium' ), '163 days → due' );
|
||||
|
||||
// 180 days ago → 180 >= 180 → overdue.
|
||||
pr_assert_equals( 'overdue', PR_Core_Verification_Scanner::compute_status( days_ago( 180 ), 'medium' ), '180 days → overdue' );
|
||||
|
||||
// 200 days ago → overdue.
|
||||
pr_assert_equals( 'overdue', PR_Core_Verification_Scanner::compute_status( days_ago( 200 ), 'medium' ), '200 days → overdue' );
|
||||
|
||||
// ── 90% boundary exactness ──────────────────────────────────────────────
|
||||
|
||||
echo "\n90% boundary (threshold=100):\n";
|
||||
$GLOBALS['pr_core_options'] = [ 'pr_core_default_threshold' => 100 ];
|
||||
|
||||
// 89 days → 89 < 90 (90% of 100) → current.
|
||||
pr_assert_equals( 'current', PR_Core_Verification_Scanner::compute_status( days_ago( 89 ), 'medium' ), '89 days (threshold 100) → current' );
|
||||
|
||||
// 90 days → 90 >= 90 and < 100 → due.
|
||||
pr_assert_equals( 'due', PR_Core_Verification_Scanner::compute_status( days_ago( 90 ), 'medium' ), '90 days (threshold 100) → due (at boundary)' );
|
||||
|
||||
// 100 days → 100 >= 100 → overdue.
|
||||
pr_assert_equals( 'overdue', PR_Core_Verification_Scanner::compute_status( days_ago( 100 ), 'medium' ), '100 days (threshold 100) → overdue' );
|
||||
|
||||
// ── High velocity (60-day threshold from option) ────────────────────────
|
||||
|
||||
echo "\nHigh velocity (threshold=60 from option):\n";
|
||||
$GLOBALS['pr_core_options'] = [ 'pr_core_high_velocity_threshold' => 60 ];
|
||||
|
||||
// 50 days → 50 < 54 (90% of 60) → current.
|
||||
pr_assert_equals( 'current', PR_Core_Verification_Scanner::compute_status( days_ago( 50 ), 'high' ), 'high: 50 days → current' );
|
||||
|
||||
// 55 days → 55 >= 54, < 60 → due.
|
||||
pr_assert_equals( 'due', PR_Core_Verification_Scanner::compute_status( days_ago( 55 ), 'high' ), 'high: 55 days → due' );
|
||||
|
||||
// 61 days → overdue.
|
||||
pr_assert_equals( 'overdue', PR_Core_Verification_Scanner::compute_status( days_ago( 61 ), 'high' ), 'high: 61 days → overdue' );
|
||||
|
||||
// ── Low velocity (365-day constant — ignores option) ────────────────────
|
||||
|
||||
echo "\nLow velocity (threshold=365, constant, ignores option):\n";
|
||||
$GLOBALS['pr_core_options'] = [ 'pr_core_default_threshold' => 999 ]; // Should be ignored for low.
|
||||
|
||||
// 300 days → 300 < 328.5 (90% of 365) → current.
|
||||
pr_assert_equals( 'current', PR_Core_Verification_Scanner::compute_status( days_ago( 300 ), 'low' ), 'low: 300 days → current' );
|
||||
|
||||
// 340 days → 340 >= 328.5, < 365 → due.
|
||||
pr_assert_equals( 'due', PR_Core_Verification_Scanner::compute_status( days_ago( 340 ), 'low' ), 'low: 340 days → due' );
|
||||
|
||||
// 366 days → overdue.
|
||||
pr_assert_equals( 'overdue', PR_Core_Verification_Scanner::compute_status( days_ago( 366 ), 'low' ), 'low: 366 days → overdue' );
|
||||
|
||||
// ── Unknown velocity falls through to medium/default ────────────────────
|
||||
|
||||
echo "\nUnknown velocity (falls to default/medium):\n";
|
||||
$GLOBALS['pr_core_options'] = [ 'pr_core_default_threshold' => 180 ];
|
||||
pr_assert_equals( 'current', PR_Core_Verification_Scanner::compute_status( days_ago( 100 ), 'unknown' ), 'unknown velocity: 100 days → current (uses default 180)' );
|
||||
|
||||
// ── Summary ─────────────────────────────────────────────────────────────
|
||||
|
||||
exit( pr_test_summary() );
|
||||
131
tests/unit/test-verification-settings.php
Normal file
131
tests/unit/test-verification-settings.php
Normal file
@@ -0,0 +1,131 @@
|
||||
<?php
|
||||
/**
|
||||
* Unit tests for PR_Core_Settings verification methods.
|
||||
*
|
||||
* Run: php tests/unit/test-verification-settings.php
|
||||
* Exit code 0 = all pass, 1 = any failure.
|
||||
*
|
||||
* What's covered:
|
||||
* - sanitize_cadence() accepts valid values, rejects invalid → 'weekly'.
|
||||
* - sanitize_emails() filters invalid addresses, preserves valid ones.
|
||||
* - reschedule_cron() no-ops when old === new value.
|
||||
* - reschedule_cron() clears + reschedules when value changes.
|
||||
*
|
||||
* @package PeptideRepoCore
|
||||
*/
|
||||
|
||||
declare(strict_types=1);
|
||||
|
||||
require_once __DIR__ . '/../bootstrap.php';
|
||||
|
||||
// ── Additional stubs needed by the settings class ───────────────────────
|
||||
|
||||
$GLOBALS['pr_core_options'] = [];
|
||||
$GLOBALS['pr_core_cron_calls'] = [];
|
||||
|
||||
if ( ! function_exists( 'get_option' ) ) {
|
||||
function get_option( string $key, $default = false ) {
|
||||
return $GLOBALS['pr_core_options'][ $key ] ?? $default;
|
||||
}
|
||||
}
|
||||
|
||||
if ( ! function_exists( 'update_option' ) ) {
|
||||
function update_option( string $key, $value ): bool {
|
||||
$GLOBALS['pr_core_options'][ $key ] = $value;
|
||||
return true;
|
||||
}
|
||||
}
|
||||
|
||||
if ( ! function_exists( 'register_setting' ) ) {
|
||||
function register_setting( string $group, string $option, array $args = [] ): void {}
|
||||
}
|
||||
|
||||
if ( ! function_exists( 'add_settings_section' ) ) {
|
||||
function add_settings_section( string $id, string $title, $cb, string $page ): void {}
|
||||
}
|
||||
|
||||
if ( ! function_exists( 'add_settings_field' ) ) {
|
||||
function add_settings_field( string $id, string $title, $cb, string $page, string $section = '' ): void {}
|
||||
}
|
||||
|
||||
if ( ! function_exists( 'is_email' ) ) {
|
||||
function is_email( string $email ): bool {
|
||||
return (bool) filter_var( $email, FILTER_VALIDATE_EMAIL );
|
||||
}
|
||||
}
|
||||
|
||||
if ( ! function_exists( 'wp_clear_scheduled_hook' ) ) {
|
||||
function wp_clear_scheduled_hook( string $hook ): void {
|
||||
$GLOBALS['pr_core_cron_calls'][] = [ 'action' => 'clear', 'hook' => $hook ];
|
||||
}
|
||||
}
|
||||
|
||||
if ( ! function_exists( 'wp_schedule_event' ) ) {
|
||||
function wp_schedule_event( int $timestamp, string $recurrence, string $hook ): void {
|
||||
$GLOBALS['pr_core_cron_calls'][] = [ 'action' => 'schedule', 'hook' => $hook, 'recurrence' => $recurrence ];
|
||||
}
|
||||
}
|
||||
|
||||
// ── Load the settings class ─────────────────────────────────────────────
|
||||
|
||||
require_once __DIR__ . '/../../includes/cpt/class-pr-core-peptide-cpt.php';
|
||||
require_once __DIR__ . '/../../includes/admin/class-pr-core-settings.php';
|
||||
|
||||
echo "== PR_Core_Settings verification methods unit tests ==\n\n";
|
||||
|
||||
// ── sanitize_cadence() ──────────────────────────────────────────────────
|
||||
|
||||
echo "sanitize_cadence():\n";
|
||||
pr_assert_equals( 'daily', PR_Core_Settings::sanitize_cadence( 'daily' ), 'daily → daily' );
|
||||
pr_assert_equals( 'weekly', PR_Core_Settings::sanitize_cadence( 'weekly' ), 'weekly → weekly' );
|
||||
pr_assert_equals( 'monthly', PR_Core_Settings::sanitize_cadence( 'monthly' ), 'monthly → monthly' );
|
||||
pr_assert_equals( 'weekly', PR_Core_Settings::sanitize_cadence( 'hourly' ), 'hourly (invalid) → weekly default' );
|
||||
pr_assert_equals( 'weekly', PR_Core_Settings::sanitize_cadence( '' ), 'empty → weekly default' );
|
||||
pr_assert_equals( 'weekly', PR_Core_Settings::sanitize_cadence( 'DAILY' ), 'uppercase → weekly (case-sensitive)' );
|
||||
|
||||
// ── sanitize_emails() ───────────────────────────────────────────────────
|
||||
|
||||
echo "\nsanitize_emails():\n";
|
||||
pr_assert_equals( '', PR_Core_Settings::sanitize_emails( '' ), 'empty → empty' );
|
||||
pr_assert_equals( 'admin@example.com', PR_Core_Settings::sanitize_emails( 'admin@example.com' ), 'valid single → kept' );
|
||||
pr_assert_equals( '', PR_Core_Settings::sanitize_emails( 'not-an-email' ), 'invalid single → empty' );
|
||||
pr_assert_equals( 'a@test.com, b@test.com', PR_Core_Settings::sanitize_emails( 'a@test.com, b@test.com' ), 'valid pair → both kept' );
|
||||
pr_assert_equals( 'good@test.com', PR_Core_Settings::sanitize_emails( 'good@test.com, bad-email' ), 'mixed → only valid kept' );
|
||||
pr_assert_equals( 'trimmed@test.com', PR_Core_Settings::sanitize_emails( ' trimmed@test.com ' ), 'whitespace trimmed around valid email' );
|
||||
|
||||
// ── reschedule_cron(): no-op when same value ────────────────────────────
|
||||
|
||||
echo "\nreschedule_cron() — no-op when value unchanged:\n";
|
||||
$GLOBALS['pr_core_cron_calls'] = [];
|
||||
PR_Core_Settings::reschedule_cron( 'weekly', 'weekly' );
|
||||
pr_assert( empty( $GLOBALS['pr_core_cron_calls'] ), 'no cron calls when old === new' );
|
||||
|
||||
// ── reschedule_cron(): clears + reschedules on change ───────────────────
|
||||
|
||||
echo "\nreschedule_cron() — reschedules when value changes:\n";
|
||||
$GLOBALS['pr_core_cron_calls'] = [];
|
||||
PR_Core_Settings::reschedule_cron( 'weekly', 'daily' );
|
||||
|
||||
$actions = array_column( $GLOBALS['pr_core_cron_calls'], 'action' );
|
||||
pr_assert( in_array( 'clear', $actions, true ), 'wp_clear_scheduled_hook was called' );
|
||||
pr_assert( in_array( 'schedule', $actions, true ), 'wp_schedule_event was called' );
|
||||
|
||||
$schedule_call = null;
|
||||
foreach ( $GLOBALS['pr_core_cron_calls'] as $call ) {
|
||||
if ( 'schedule' === $call['action'] ) {
|
||||
$schedule_call = $call;
|
||||
break;
|
||||
}
|
||||
}
|
||||
pr_assert( null !== $schedule_call, 'schedule call found' );
|
||||
pr_assert_equals( 'pr_core_verification_scan', $schedule_call['hook'] ?? '', 'rescheduled hook = pr_core_verification_scan' );
|
||||
pr_assert_equals( 'daily', $schedule_call['recurrence'] ?? '', 'rescheduled with new cadence "daily"' );
|
||||
|
||||
// Clear fires before schedule (correct ordering).
|
||||
$clear_idx = array_search( 'clear', $actions, true );
|
||||
$schedule_idx = array_search( 'schedule', $actions, true );
|
||||
pr_assert( $clear_idx < $schedule_idx, 'clear fires before schedule' );
|
||||
|
||||
// ── Summary ─────────────────────────────────────────────────────────────
|
||||
|
||||
exit( pr_test_summary() );
|
||||
Reference in New Issue
Block a user