Files
peptide-repo-core/includes/migrations/class-pr-core-migration-0003-candidate-queue.php
2026-06-16 15:26:16 +00:00

73 lines
2.3 KiB
PHP

<?php
declare(strict_types=1);
/**
* Migration 0003: Create the pr_ai_candidate_queue table.
*
* What: Creates the AI-extracted dosing candidate queue table.
* Who calls it: PR_Core_Migration_Runner::run_pending().
* Dependencies: WordPress $wpdb, dbDelta().
*
* Approved rows are copied into pr_dosing_rows with source='ai-candidate-approved'
* and ai_candidate_id set; queue row marked 'merged'.
*
* @see ARCHITECTURE.md — AI-assist candidate-extraction pipeline.
*/
class PR_Core_Migration_0003_Candidate_Queue {
/** @var string[] Valid queue status enum values. */
public const STATUSES = array(
'pending',
'approved',
'rejected',
'merged',
);
/**
* Create the pr_ai_candidate_queue table.
*
* Side effects: database DDL via dbDelta().
*
* @return void
*/
public function up(): void {
global $wpdb;
$table = $wpdb->prefix . 'pr_ai_candidate_queue';
$charset = $wpdb->get_charset_collate();
$sql = "CREATE TABLE {$table} (
id BIGINT UNSIGNED NOT NULL AUTO_INCREMENT,
peptide_id BIGINT UNSIGNED NOT NULL,
dose_min DECIMAL(12,4) NULL,
dose_max DECIMAL(12,4) NULL,
dose_unit VARCHAR(16) NOT NULL,
route VARCHAR(32) NOT NULL,
frequency VARCHAR(64) NULL,
duration_value INT UNSIGNED NULL,
duration_unit VARCHAR(16) NULL,
population VARCHAR(32) NOT NULL,
indication VARCHAR(255) NULL,
evidence_strength VARCHAR(32) NOT NULL,
study_title VARCHAR(500) NULL,
study_year SMALLINT UNSIGNED NULL,
citation_pubmed_id VARCHAR(16) NULL,
citation_doi VARCHAR(128) NULL,
citation_url VARCHAR(500) NULL,
notes TEXT NULL,
extraction_confidence FLOAT NOT NULL DEFAULT 0,
queue_status VARCHAR(16) NOT NULL DEFAULT 'pending',
extracted_at DATETIME NOT NULL,
reviewed_by BIGINT UNSIGNED NULL,
reviewed_at DATETIME NULL,
reviewer_notes TEXT NULL,
PRIMARY KEY (id),
KEY idx_peptide (peptide_id),
KEY idx_status (queue_status),
KEY idx_confidence (extraction_confidence),
KEY idx_peptide_status (peptide_id, queue_status)
) {$charset};";
dbDelta( $sql );
}
}