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peptide-repo-core/tests/unit/JsonldTest.php
peptiderepo 08d7696444 ci: adopt estate CI standard + convert 7 hand-rolled tests to PHPUnit (v0.7.0) 
- Replace hand-rolled ci.yml jobs with thin caller to reusable estate workflow
  (peptiderepo/peptide-e2e/.github/workflows/ci.yml@main); tests: stubs; has_js: false.
  workflow_call + permissions: contents: write added per estate standard so deploy.yml
  can gate on it and phpcbf auto-commit step has required token scope.

- Convert 7 hand-rolled test-*.php scripts to PHPUnit TestCase classes:
    PeptideCptTest        <- test-peptide-cpt.php
    VerificationScannerTest <- test-verification-scanner.php
    VerificationSettingsTest <- test-verification-settings.php
    Migration0004Test     <- test-migration-0004.php
    JsonldTest            <- test-jsonld.php
    JsonldWebpageTest     <- test-jsonld-webpage.php
    JsonldPeptidePieceTest <- test-jsonld-peptide-piece.php

  All assertions preserved; old scripts remain in tests/unit/ but CI no longer
  runs them (PHPUnit discovery matches *Test.php only).

- Rewrite tests/bootstrap.php: full WP stub library for PHPUnit (WP_Post, WP_Error,
  all option/cron/CPT/taxonomy/permalink stubs); registers PR_Core_Autoloader.
- Add phpunit.xml.dist (bootstrap, unit suite, includes/ coverage).
- Add phpunit/phpunit ^9.6 + yoast/phpunit-polyfills ^2.0 to require-dev.
- Add composer test script (vendor/bin/phpunit --configuration phpunit.xml.dist).
- deploy.yml: add permissions: contents: write.
- Version bump 0.6.2 -> 0.7.0.

Agent-Session: claude-adopt-ci-20260616
2026-06-16 15:23:48 +00:00

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<?php
/**
* Unit tests for JSON-LD v0.6.0 emission.
*
* Ported from tests/unit/test-jsonld.php.
*
* Coverage:
* - Drug node: @id, @type, fields present/absent based on meta.
* - FAQPage: present/absent, @id, mainEntity count.
* - MedicalWebPage retype on/off peptide singular.
* - No duplicate WebPage/BreadcrumbList nodes from our builders.
* - PR_Core_Schema_Sanitizers::sanitize_faq_items() validation.
*
* @package PeptideRepoCore\Tests
*/
use PHPUnit\Framework\TestCase;
/**
* Tests for JSON-LD Drug/FAQ/Webpage emission.
*/
class JsonldTest extends TestCase {
protected function setUp(): void {
$GLOBALS['pr_test_postmeta'] = [];
$GLOBALS['pr_test_is_singular'] = false;
$GLOBALS['pr_test_singular_type'] = '';
$GLOBALS['pr_test_the_id'] = 0;
$GLOBALS['pr_core_test_state'] = [
'existing_post_types' => [],
'existing_taxonomies' => [],
'registered_post_types' => [],
'registered_taxonomies' => [],
'registered_meta' => [],
'added_actions' => [],
'added_filters' => [],
];
require_once PR_CORE_PLUGIN_DIR . 'includes/cpt/class-pr-core-schema-sanitizers.php';
require_once PR_CORE_PLUGIN_DIR . 'includes/cpt/class-pr-core-peptide-cpt.php';
require_once PR_CORE_PLUGIN_DIR . 'includes/dto/class-pr-core-peptide-dto.php';
require_once PR_CORE_PLUGIN_DIR . 'includes/frontend/class-pr-core-jsonld-drug.php';
require_once PR_CORE_PLUGIN_DIR . 'includes/frontend/class-pr-core-jsonld-faq.php';
require_once PR_CORE_PLUGIN_DIR . 'includes/frontend/class-pr-core-jsonld-webpage.php';
require_once PR_CORE_PLUGIN_DIR . 'includes/frontend/class-pr-core-jsonld.php';
}
// ── Helper ────────────────────────────────────────────────────────
/**
* @param array<string, mixed> $overrides
*/
private function make_peptide_dto( array $overrides = [] ): PR_Core_Peptide_DTO {
return new PR_Core_Peptide_DTO( array_merge( [
'id' => 1,
'title' => 'BPC-157',
'slug' => 'bpc-157',
'content' => '',
'excerpt' => 'A synthetic peptide.',
'status' => 'publish',
'display_name' => 'BPC-157',
'aliases' => [],
'molecular_formula' => '',
'molecular_weight' => 0.0,
'cas_number' => '',
'drugbank_id' => '',
'chembl_id' => '',
'evidence_strength' => 'preclinical',
'editorial_review_status' => 'published',
'last_editorial_review_at' => '',
'medical_editor_id' => 0,
'categories' => [],
'families' => [],
], $overrides ) );
}
// ── Drug @id ─────────────────────────────────────────────────────
public function test_drug_node_has_id(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertArrayHasKey( '@id', $drug_node );
}
public function test_drug_node_id_format(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertSame( 'https://peptiderepo.com/peptides/bpc-157/#drug', $drug_node['@id'] );
}
// ── Drug @type ────────────────────────────────────────────────────
public function test_drug_type_is_array(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertIsArray( $drug_node['@type'] );
}
public function test_drug_type_includes_drug(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertContains( 'Drug', $drug_node['@type'] );
}
public function test_drug_type_includes_molecular_entity(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertContains( 'MolecularEntity', $drug_node['@type'] );
}
// ── Drug fields present when meta set ────────────────────────────
public function test_molecular_formula_present_when_meta_set(): void {
$GLOBALS['pr_test_postmeta'][1] = [ '_pr_molecular_formula' => 'C62H98N16O22', '_pr_molecular_weight' => '1419.5', '_pr_aliases' => '[]' ];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertArrayHasKey( 'molecularFormula', $drug_node );
$this->assertSame( 'C62H98N16O22', $drug_node['molecularFormula'] );
}
public function test_molecular_weight_present_when_meta_set(): void {
$GLOBALS['pr_test_postmeta'][1] = [ '_pr_molecular_formula' => '', '_pr_molecular_weight' => '1419.5', '_pr_aliases' => '[]' ];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertArrayHasKey( 'molecularWeight', $drug_node );
$this->assertSame( 'QuantitativeValue', $drug_node['molecularWeight']['@type'] );
$this->assertSame( 1419.5, $drug_node['molecularWeight']['value'] );
$this->assertSame( 'g/mol', $drug_node['molecularWeight']['unitText'] );
}
public function test_alternate_name_present_when_aliases_set(): void {
$GLOBALS['pr_test_postmeta'][1] = [ '_pr_molecular_formula' => '', '_pr_molecular_weight' => '0', '_pr_aliases' => '["Body Protection Compound-157","PL 14736"]' ];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertArrayHasKey( 'alternateName', $drug_node );
$this->assertCount( 2, $drug_node['alternateName'] );
}
// ── Drug fields omitted when meta empty ──────────────────────────
public function test_molecular_formula_omitted_when_meta_empty(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertArrayNotHasKey( 'molecularFormula', $drug_node );
}
public function test_molecular_weight_omitted_when_meta_empty(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertArrayNotHasKey( 'molecularWeight', $drug_node );
}
public function test_alternate_name_omitted_when_aliases_empty(): void {
$GLOBALS['pr_test_postmeta'][1] = [ '_pr_aliases' => '[]' ];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$this->assertArrayNotHasKey( 'alternateName', $drug_node );
}
// ── FAQPage emission ──────────────────────────────────────────────
public function test_faq_piece_not_null_when_items_present(): void {
$GLOBALS['pr_test_postmeta'][1] = [
'_pr_faq_items' => wp_json_encode( [
[ 'question' => 'What is BPC-157?', 'answer' => 'A synthetic peptide.' ],
[ 'question' => 'Is it legal?', 'answer' => 'Research use only.' ],
] ),
];
$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
$this->assertNotNull( $faq_piece );
}
public function test_faq_piece_type_is_faq_page(): void {
$GLOBALS['pr_test_postmeta'][1] = [
'_pr_faq_items' => wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ),
];
$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
$this->assertSame( 'FAQPage', $faq_piece['@type'] );
}
public function test_faq_piece_id_format(): void {
$permalink = 'https://peptiderepo.com/peptides/bpc-157/';
$GLOBALS['pr_test_postmeta'][1] = [
'_pr_faq_items' => wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ),
];
$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, $permalink );
$this->assertSame( $permalink . '#faq', $faq_piece['@id'] );
}
public function test_faq_piece_has_main_entity(): void {
$GLOBALS['pr_test_postmeta'][1] = [
'_pr_faq_items' => wp_json_encode( [
[ 'question' => 'What is BPC-157?', 'answer' => 'A synthetic peptide.' ],
[ 'question' => 'Is it legal?', 'answer' => 'Research use only.' ],
] ),
];
$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
$this->assertArrayHasKey( 'mainEntity', $faq_piece );
$this->assertCount( 2, $faq_piece['mainEntity'] );
}
public function test_faq_main_entity_question_type(): void {
$GLOBALS['pr_test_postmeta'][1] = [
'_pr_faq_items' => wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ),
];
$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
$this->assertSame( 'Question', $faq_piece['mainEntity'][0]['@type'] );
}
public function test_faq_main_entity_has_accepted_answer(): void {
$GLOBALS['pr_test_postmeta'][1] = [
'_pr_faq_items' => wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ),
];
$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
$this->assertArrayHasKey( 'acceptedAnswer', $faq_piece['mainEntity'][0] );
}
public function test_faq_piece_null_when_items_json_empty(): void {
$GLOBALS['pr_test_postmeta'][1] = [ '_pr_faq_items' => '[]' ];
$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
$this->assertNull( $faq_piece );
}
public function test_faq_piece_null_when_items_absent(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$faq_piece = ( new PR_Core_Jsonld_Faq() )->build( 1, 'https://peptiderepo.com/peptides/bpc-157/' );
$this->assertNull( $faq_piece );
}
// ── MedicalWebPage retype ─────────────────────────────────────────
public function test_retype_returns_medical_webpage_on_peptide_singular(): void {
$GLOBALS['pr_test_is_singular'] = true;
$GLOBALS['pr_test_singular_type'] = 'peptide';
$result = ( new PR_Core_Jsonld_Webpage() )->retype_to_medical_webpage( 'WebPage' );
$this->assertSame( 'MedicalWebPage', $result );
}
public function test_retype_passes_through_on_non_peptide_page(): void {
$GLOBALS['pr_test_is_singular'] = false;
$GLOBALS['pr_test_singular_type'] = '';
$result = ( new PR_Core_Jsonld_Webpage() )->retype_to_medical_webpage( 'WebPage' );
$this->assertSame( 'WebPage', $result );
}
// ── No duplicate nodes from our builders ──────────────────────────
public function test_builders_do_not_emit_webpage_type(): void {
$GLOBALS['pr_test_postmeta'][1] = [
'_pr_molecular_formula' => 'C62H98N16O22',
'_pr_molecular_weight' => '1419.5',
'_pr_aliases' => '["Body Protection Compound-157","PL 14736"]',
];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$types = is_array( $drug_node['@type'] ) ? $drug_node['@type'] : [ $drug_node['@type'] ];
$this->assertNotContains( 'WebPage', $types );
$this->assertNotContains( 'MedicalWebPage', $types );
}
public function test_builders_do_not_emit_breadcrumb_type(): void {
$GLOBALS['pr_test_postmeta'][1] = [];
$peptide = $this->make_peptide_dto();
$drug_node = ( new PR_Core_Jsonld_Drug() )->build( $peptide );
$types = is_array( $drug_node['@type'] ) ? $drug_node['@type'] : [ $drug_node['@type'] ];
$this->assertNotContains( 'BreadcrumbList', $types );
}
// ── sanitize_faq_items() ──────────────────────────────────────────
public function test_sanitize_faq_items_valid_input(): void {
$result = PR_Core_Schema_Sanitizers::sanitize_faq_items( wp_json_encode( [ [ 'question' => 'Q?', 'answer' => 'A.' ] ] ) );
$decoded = json_decode( $result, true );
$this->assertIsArray( $decoded );
$this->assertCount( 1, $decoded );
}
public function test_sanitize_faq_items_empty_json_array(): void {
$this->assertSame( '[]', PR_Core_Schema_Sanitizers::sanitize_faq_items( '[]' ) );
}
public function test_sanitize_faq_items_malformed_json(): void {
$this->assertSame( '[]', PR_Core_Schema_Sanitizers::sanitize_faq_items( 'not-json' ) );
}
public function test_sanitize_faq_items_drops_item_missing_answer(): void {
$result = PR_Core_Schema_Sanitizers::sanitize_faq_items( wp_json_encode( [ [ 'question' => 'No answer here?' ] ] ) );
$decoded = json_decode( $result, true );
$this->assertCount( 0, $decoded );
}
}
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