808b2509d8
Implements ADR-0002: canonical peptide schema as shared data layer for the peptiderepo.com ecosystem. All Tier 1 tools (Reconstitution Calculator, Dosage Reference, Legal Status Tracker, PSA enhancements) build on this. Includes: - pr_peptide CPT with REST, taxonomies, 11 meta fields - 3 custom tables: pr_dosing_rows, pr_legal_cells, pr_ai_candidate_queue - Sequential migration runner with schema versioning - 4 typed DTOs and 4 repository classes (full CRUD) - REST API (pr-core/v1): 6 endpoints (read public, write auth-gated) - Admin UI: 3 meta boxes, custom columns, AI candidate queue page - Shared disclaimer component (shortcode + static API) - JSON-LD Drug schema emission on single peptide pages - Seed data fixture (3 peptides, 10 dosing rows, 5 legal cells) - Full teardown in uninstall.php - CI: PHP lint 8.0-8.2, PHPCS WordPress, 300-line check All 22 PHP files under 300 lines. Highest: peptide-cpt at 265. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
28 lines
2.6 KiB
Markdown
28 lines
2.6 KiB
Markdown
# Changelog
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All notable changes to Peptide Repo Core are documented here.
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Format: [Semantic Versioning](https://semver.org/).
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## [0.1.0] — 2026-04-17
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### Added
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- `pr_peptide` custom post type with REST API, archive, and taxonomies (`pr_peptide_category`, `pr_peptide_family`).
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- Post-meta fields: display_name, aliases, molecular_formula, molecular_weight, cas_number, drugbank_id, chembl_id, evidence_strength, editorial_review_status, last_editorial_review_at, medical_editor_id.
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- Custom table `pr_dosing_rows` with schema migration 0001 — high-cardinality dosing data with citation tracking, evidence strength, and supersede (soft-delete) pattern.
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- Custom table `pr_legal_cells` with schema migration 0002 — per-country legal status with unique constraint on peptide x country (active).
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- Custom table `pr_ai_candidate_queue` with schema migration 0003 — AI-extracted dosing candidates awaiting human review.
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- Migration runner with sequential versioning (`pr_core_schema_version` option, `PR_CORE_TARGET_SCHEMA_VERSION` constant).
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- Typed DTOs: `PR_Core_Peptide_DTO`, `PR_Core_Dosing_Row_DTO`, `PR_Core_Legal_Cell_DTO`, `PR_Core_Candidate_DTO`.
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- Repository classes: `PR_Core_Peptide_Repository`, `PR_Core_Dosing_Repository`, `PR_Core_Legal_Repository`, `PR_Core_Candidate_Queue_Repository`.
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- REST API (`pr-core/v1`): list/get peptides, list/create dosing rows, list/create legal cells.
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- Admin UI: Scientific Identifiers meta box, Dosing Data meta box (read-only), Legal Status meta box (read-only), custom list-table columns (Evidence, Editorial, Dosing Rows).
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- AI Candidate Queue admin page with approve/reject workflow (copies approved rows to dosing table).
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- Shared disclaimer component: `[pr_disclaimer surface="dosing"]` shortcode, `PR_Core_Disclaimer::render()` static method, `pr_core_disclaimer_for_surface` filter.
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- JSON-LD emission: schema.org `Drug` type on single peptide pages with `pr_core_jsonld_peptide` filter.
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- Public API filters: `pr_core_get_indexable_corpus`, `pr_core_disclaimer_for_surface`, `pr_core_evidence_strength_label`.
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- Public API actions: `pr_core_before/after_peptide_publish`, `pr_core_before/after_dosing_row_publish`, `pr_core_before/after_legal_cell_publish`, `pr_core_candidate_approved/rejected`.
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- `manage_peptide_content` capability granted to administrators and editors on activation.
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- Full teardown in `uninstall.php` (tables, posts, terms, options, capabilities).
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- Seed data fixture: 3 peptides (BPC-157, Semaglutide, TB-500), 10 dosing rows, 5 legal cells.
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- CI workflow: PHP lint (8.0/8.1/8.2), PHPCS (WordPress standard), 300-line file check.
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