fix: resolve PHPCS coding standard violations for CI

- Convert all PHP files from CRLF to LF line endings
- Reformat multi-line function calls per WPCS standard
  (opening paren last on line, closing paren on own line)
- Fix assignment-in-conditional in single-peptide.php
- Change double quotes to single quotes in content-none.php
- Exclude InvalidClassFileName sniff (standard WP functions.php pattern)
- Fix archive-peptide.php opening PHP tag placement

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
peptiderepo
2026-04-12 22:54:51 +07:00
parent 7226a08719
commit 65b9f7a13c
12 changed files with 1125 additions and 1033 deletions

View File

@@ -26,4 +26,9 @@
<rule ref="Generic.Arrays.DisallowShortArraySyntax">
<exclude name="Generic.Arrays.DisallowShortArraySyntax"/>
</rule>
<!-- Standard WordPress practice: Walker class lives in functions.php -->
<rule ref="WordPress.Files.FileName">
<exclude name="WordPress.Files.FileName.InvalidClassFileName"/>
</rule>
</ruleset>

72
404.php
View File

@@ -1,36 +1,36 @@
<?php
/**
* The 404 template
*
* @package peptide-starter
*/
get_header();
?>
<main id="main" class="site-main">
<div class="ps-container">
<div class="error-404 not-found">
<h1><?php esc_html_e( '404 - Page Not Found', 'peptide-starter' ); ?></h1>
<p><?php esc_html_e( "Sorry, the page you're looking for doesn't exist. It might have been moved or deleted.", 'peptide-starter' ); ?></p>
<form role="search" method="get" class="search-form ps-404-search-form" action="<?php echo esc_url( home_url( '/' ) ); ?>">
<label>
<span class="screen-reader-text"><?php esc_html_e( 'Search for:', 'peptide-starter' ); ?></span>
<input type="search" class="search-submit" placeholder="<?php esc_attr_e( 'Search peptides...', 'peptide-starter' ); ?>" value="<?php echo esc_attr( get_search_query() ); ?>" name="s" title="<?php esc_attr_e( 'Search for:', 'peptide-starter' ); ?>" />
</label>
</form>
<div class="ps-404-cta-group">
<a href="<?php echo esc_url( home_url( '/' ) ); ?>" class="ps-btn ps-btn-primary">
<?php esc_html_e( 'Back to Home', 'peptide-starter' ); ?>
</a>
<a href="<?php echo esc_url( home_url( '/peptides' ) ); ?>" class="ps-btn ps-btn-secondary">
<?php esc_html_e( 'Browse Peptides', 'peptide-starter' ); ?>
</a>
</div>
</div>
</div>
</main>
<?php get_footer(); ?>
<?php
/**
* The 404 template
*
* @package peptide-starter
*/
get_header();
?>
<main id="main" class="site-main">
<div class="ps-container">
<div class="error-404 not-found">
<h1><?php esc_html_e( '404 - Page Not Found', 'peptide-starter' ); ?></h1>
<p><?php esc_html_e( "Sorry, the page you're looking for doesn't exist. It might have been moved or deleted.", 'peptide-starter' ); ?></p>
<form role="search" method="get" class="search-form ps-404-search-form" action="<?php echo esc_url( home_url( '/' ) ); ?>">
<label>
<span class="screen-reader-text"><?php esc_html_e( 'Search for:', 'peptide-starter' ); ?></span>
<input type="search" class="search-submit" placeholder="<?php esc_attr_e( 'Search peptides...', 'peptide-starter' ); ?>" value="<?php echo esc_attr( get_search_query() ); ?>" name="s" title="<?php esc_attr_e( 'Search for:', 'peptide-starter' ); ?>" />
</label>
</form>
<div class="ps-404-cta-group">
<a href="<?php echo esc_url( home_url( '/' ) ); ?>" class="ps-btn ps-btn-primary">
<?php esc_html_e( 'Back to Home', 'peptide-starter' ); ?>
</a>
<a href="<?php echo esc_url( home_url( '/peptides' ) ); ?>" class="ps-btn ps-btn-secondary">
<?php esc_html_e( 'Browse Peptides', 'peptide-starter' ); ?>
</a>
</div>
</div>
</div>
</main>
<?php get_footer(); ?>

View File

@@ -70,4 +70,5 @@ get_header();
</div>
</main>
<?php get_footer();
<?php
get_footer();

View File

@@ -1,84 +1,84 @@
/**
* Navigation and Mobile Menu Toggle
* Peptide Starter Theme
*
* Handles:
* - Mobile hamburger menu toggle
* - Navigation overlay click handling
* - Menu state persistence
*/
(function() {
'use strict';
const menuToggle = document.querySelector('.menu-toggle');
const primaryNav = document.querySelector('.primary-navigation');
const navOverlay = document.querySelector('.nav-overlay');
if (!menuToggle || !primaryNav || !navOverlay) {
return;
}
/**
* Toggle mobile menu visibility
*/
function toggleMenu() {
const isActive = primaryNav.classList.contains('active');
if (isActive) {
closeMenu();
} else {
openMenu();
}
}
/**
* Open mobile menu
*/
function openMenu() {
primaryNav.classList.add('active');
navOverlay.classList.add('active');
document.body.style.overflow = 'hidden';
menuToggle.setAttribute('aria-expanded', 'true');
}
/**
* Close mobile menu
*/
function closeMenu() {
primaryNav.classList.remove('active');
navOverlay.classList.remove('active');
document.body.style.overflow = '';
menuToggle.setAttribute('aria-expanded', 'false');
}
// Menu toggle button click
menuToggle.addEventListener('click', toggleMenu);
// Overlay click
navOverlay.addEventListener('click', closeMenu);
// Close menu when a nav link is clicked
const navLinks = primaryNav.querySelectorAll('a');
navLinks.forEach(link => {
link.addEventListener('click', closeMenu);
});
// Close menu on Escape key
document.addEventListener('keydown', (e) => {
if (e.key === 'Escape') {
closeMenu();
}
});
// Set initial aria-expanded state
menuToggle.setAttribute('aria-expanded', 'false');
// Close menu when window is resized above mobile breakpoint
const mediaQuery = window.matchMedia('(min-width: 768px)');
mediaQuery.addEventListener('change', (e) => {
if (e.matches) {
closeMenu();
}
});
})();
/**
* Navigation and Mobile Menu Toggle
* Peptide Starter Theme
*
* Handles:
* - Mobile hamburger menu toggle
* - Navigation overlay click handling
* - Menu state persistence
*/
(function() {
'use strict';
const menuToggle = document.querySelector('.menu-toggle');
const primaryNav = document.querySelector('.primary-navigation');
const navOverlay = document.querySelector('.nav-overlay');
if (!menuToggle || !primaryNav || !navOverlay) {
return;
}
/**
* Toggle mobile menu visibility
*/
function toggleMenu() {
const isActive = primaryNav.classList.contains('active');
if (isActive) {
closeMenu();
} else {
openMenu();
}
}
/**
* Open mobile menu
*/
function openMenu() {
primaryNav.classList.add('active');
navOverlay.classList.add('active');
document.body.style.overflow = 'hidden';
menuToggle.setAttribute('aria-expanded', 'true');
}
/**
* Close mobile menu
*/
function closeMenu() {
primaryNav.classList.remove('active');
navOverlay.classList.remove('active');
document.body.style.overflow = '';
menuToggle.setAttribute('aria-expanded', 'false');
}
// Menu toggle button click
menuToggle.addEventListener('click', toggleMenu);
// Overlay click
navOverlay.addEventListener('click', closeMenu);
// Close menu when a nav link is clicked
const navLinks = primaryNav.querySelectorAll('a');
navLinks.forEach(link => {
link.addEventListener('click', closeMenu);
});
// Close menu on Escape key
document.addEventListener('keydown', (e) => {
if (e.key === 'Escape') {
closeMenu();
}
});
// Set initial aria-expanded state
menuToggle.setAttribute('aria-expanded', 'false');
// Close menu when window is resized above mobile breakpoint
const mediaQuery = window.matchMedia('(min-width: 768px)');
mediaQuery.addEventListener('change', (e) => {
if (e.matches) {
closeMenu();
}
});
})();

View File

@@ -1,210 +1,210 @@
/**
* Theme Utilities
* Peptide Starter Theme
*
* Handles:
* - Dark mode toggle functionality
* - Dark mode preference persistence
* - Plugin dark mode coordination
* - Smooth transitions
*/
(function() {
'use strict';
const html = document.documentElement;
const darkModeToggle = document.querySelector('.dark-mode-toggle');
const sunIcon = document.querySelector('.sun-icon');
const moonIcon = document.querySelector('.moon-icon');
if (!darkModeToggle) {
return;
}
/**
* Get current theme preference
* @returns {string} 'dark' or 'light'
*/
function getCurrentTheme() {
const stored = localStorage.getItem('peptide-starter-theme');
if (stored) {
return stored;
}
const currentAttr = html.getAttribute('data-theme');
if (currentAttr) {
return currentAttr;
}
const systemDark = window.matchMedia('(prefers-color-scheme: dark)').matches;
return systemDark ? 'dark' : 'light';
}
/**
* Set theme preference
* @param {string} theme - 'dark' or 'light'
*/
function setTheme(theme) {
html.setAttribute('data-theme', theme);
localStorage.setItem('peptide-starter-theme', theme);
// Update icon visibility
updateIcons(theme);
// Notify plugins about theme change via custom event
const event = new CustomEvent('themechange', {
detail: { theme: theme }
});
document.dispatchEvent(event);
// Also update body class for CSS hooks
document.body.classList.remove('dark-mode', 'light-mode');
document.body.classList.add(theme === 'dark' ? 'dark-mode' : 'light-mode');
}
/**
* Update icon visibility based on theme
* @param {string} theme - 'dark' or 'light'
*/
function updateIcons(theme) {
if (theme === 'dark') {
sunIcon.style.display = 'block';
moonIcon.style.display = 'none';
} else {
sunIcon.style.display = 'none';
moonIcon.style.display = 'block';
}
}
/**
* Toggle between dark and light mode
*/
function toggleDarkMode() {
const currentTheme = getCurrentTheme();
const newTheme = currentTheme === 'dark' ? 'light' : 'dark';
setTheme(newTheme);
}
// Initialize theme on page load
const initialTheme = getCurrentTheme();
setTheme(initialTheme);
// Dark mode toggle button click
darkModeToggle.addEventListener('click', toggleDarkMode);
// Listen for system preference changes
const mediaQuery = window.matchMedia('(prefers-color-scheme: dark)');
mediaQuery.addEventListener('change', (e) => {
const stored = localStorage.getItem('peptide-starter-theme');
if (!stored) {
setTheme(e.matches ? 'dark' : 'light');
}
});
// Expose API for plugins to read/listen to theme changes
window.peptideStarterTheme = {
getCurrentTheme: getCurrentTheme,
setTheme: setTheme,
toggleDarkMode: toggleDarkMode,
};
/**
* Plugin Integration Example:
* Plugins can listen to theme changes via:
*
* 1. Custom event listener:
* document.addEventListener('themechange', function(e) {
* console.log('Theme changed to:', e.detail.theme);
* });
*
* 2. MutationObserver on data-theme:
* const observer = new MutationObserver((mutations) => {
* const theme = html.getAttribute('data-theme');
* console.log('Theme is now:', theme);
* });
* observer.observe(html, { attributes: true });
*
* 3. Direct access to CSS custom properties which theme controls
*/
/**
* Smooth scroll behavior
*/
function initSmoothScroll() {
const prefersReducedMotion = window.matchMedia('(prefers-reduced-motion: reduce)').matches;
if (!prefersReducedMotion) {
document.documentElement.style.scrollBehavior = 'smooth';
}
}
initSmoothScroll();
/**
* Add focus-visible polyfill for older browsers
*/
function initFocusVisible() {
const isKeyboardEvent = (e) => {
return e.mozInputSource === MOZ_SOURCE_KEYBOARD ||
e.detail === 0 ||
(e.sourceCapabilities && e.sourceCapabilities.firesTouchEvents === false);
};
document.addEventListener('mousedown', (e) => {
document.body.classList.remove('keyboard-focus');
}, true);
document.addEventListener('keydown', () => {
document.body.classList.add('keyboard-focus');
}, true);
}
// Search overlay functionality (Peptide Search AI integration)
const searchToggle = document.querySelector('.search-toggle');
const searchOverlay = document.getElementById('search-overlay');
const searchOverlayClose = document.querySelector('.search-overlay-close');
function openSearchOverlay() {
if (!searchOverlay) return;
searchOverlay.classList.add('active');
searchOverlay.setAttribute('aria-hidden', 'false');
document.body.style.overflow = 'hidden';
// Focus the search input inside the overlay
const input = searchOverlay.querySelector('.psa-search-input, .ps-search-input, input[type="search"], input[type="text"]');
if (input) {
setTimeout(() => input.focus(), 100);
}
}
function closeSearchOverlay() {
if (!searchOverlay) return;
searchOverlay.classList.remove('active');
searchOverlay.setAttribute('aria-hidden', 'true');
document.body.style.overflow = '';
// Return focus to search toggle
if (searchToggle) searchToggle.focus();
}
if (searchToggle) {
searchToggle.addEventListener('click', openSearchOverlay);
}
if (searchOverlayClose) {
searchOverlayClose.addEventListener('click', closeSearchOverlay);
}
if (searchOverlay) {
// Close overlay when clicking the backdrop
searchOverlay.addEventListener('click', (e) => {
if (e.target === searchOverlay) {
closeSearchOverlay();
}
});
// Close on Escape key
document.addEventListener('keydown', (e) => {
if (e.key === 'Escape' && searchOverlay.classList.contains('active')) {
closeSearchOverlay();
}
});
}
})();
/**
* Theme Utilities
* Peptide Starter Theme
*
* Handles:
* - Dark mode toggle functionality
* - Dark mode preference persistence
* - Plugin dark mode coordination
* - Smooth transitions
*/
(function() {
'use strict';
const html = document.documentElement;
const darkModeToggle = document.querySelector('.dark-mode-toggle');
const sunIcon = document.querySelector('.sun-icon');
const moonIcon = document.querySelector('.moon-icon');
if (!darkModeToggle) {
return;
}
/**
* Get current theme preference
* @returns {string} 'dark' or 'light'
*/
function getCurrentTheme() {
const stored = localStorage.getItem('peptide-starter-theme');
if (stored) {
return stored;
}
const currentAttr = html.getAttribute('data-theme');
if (currentAttr) {
return currentAttr;
}
const systemDark = window.matchMedia('(prefers-color-scheme: dark)').matches;
return systemDark ? 'dark' : 'light';
}
/**
* Set theme preference
* @param {string} theme - 'dark' or 'light'
*/
function setTheme(theme) {
html.setAttribute('data-theme', theme);
localStorage.setItem('peptide-starter-theme', theme);
// Update icon visibility
updateIcons(theme);
// Notify plugins about theme change via custom event
const event = new CustomEvent('themechange', {
detail: { theme: theme }
});
document.dispatchEvent(event);
// Also update body class for CSS hooks
document.body.classList.remove('dark-mode', 'light-mode');
document.body.classList.add(theme === 'dark' ? 'dark-mode' : 'light-mode');
}
/**
* Update icon visibility based on theme
* @param {string} theme - 'dark' or 'light'
*/
function updateIcons(theme) {
if (theme === 'dark') {
sunIcon.style.display = 'block';
moonIcon.style.display = 'none';
} else {
sunIcon.style.display = 'none';
moonIcon.style.display = 'block';
}
}
/**
* Toggle between dark and light mode
*/
function toggleDarkMode() {
const currentTheme = getCurrentTheme();
const newTheme = currentTheme === 'dark' ? 'light' : 'dark';
setTheme(newTheme);
}
// Initialize theme on page load
const initialTheme = getCurrentTheme();
setTheme(initialTheme);
// Dark mode toggle button click
darkModeToggle.addEventListener('click', toggleDarkMode);
// Listen for system preference changes
const mediaQuery = window.matchMedia('(prefers-color-scheme: dark)');
mediaQuery.addEventListener('change', (e) => {
const stored = localStorage.getItem('peptide-starter-theme');
if (!stored) {
setTheme(e.matches ? 'dark' : 'light');
}
});
// Expose API for plugins to read/listen to theme changes
window.peptideStarterTheme = {
getCurrentTheme: getCurrentTheme,
setTheme: setTheme,
toggleDarkMode: toggleDarkMode,
};
/**
* Plugin Integration Example:
* Plugins can listen to theme changes via:
*
* 1. Custom event listener:
* document.addEventListener('themechange', function(e) {
* console.log('Theme changed to:', e.detail.theme);
* });
*
* 2. MutationObserver on data-theme:
* const observer = new MutationObserver((mutations) => {
* const theme = html.getAttribute('data-theme');
* console.log('Theme is now:', theme);
* });
* observer.observe(html, { attributes: true });
*
* 3. Direct access to CSS custom properties which theme controls
*/
/**
* Smooth scroll behavior
*/
function initSmoothScroll() {
const prefersReducedMotion = window.matchMedia('(prefers-reduced-motion: reduce)').matches;
if (!prefersReducedMotion) {
document.documentElement.style.scrollBehavior = 'smooth';
}
}
initSmoothScroll();
/**
* Add focus-visible polyfill for older browsers
*/
function initFocusVisible() {
const isKeyboardEvent = (e) => {
return e.mozInputSource === MOZ_SOURCE_KEYBOARD ||
e.detail === 0 ||
(e.sourceCapabilities && e.sourceCapabilities.firesTouchEvents === false);
};
document.addEventListener('mousedown', (e) => {
document.body.classList.remove('keyboard-focus');
}, true);
document.addEventListener('keydown', () => {
document.body.classList.add('keyboard-focus');
}, true);
}
// Search overlay functionality (Peptide Search AI integration)
const searchToggle = document.querySelector('.search-toggle');
const searchOverlay = document.getElementById('search-overlay');
const searchOverlayClose = document.querySelector('.search-overlay-close');
function openSearchOverlay() {
if (!searchOverlay) return;
searchOverlay.classList.add('active');
searchOverlay.setAttribute('aria-hidden', 'false');
document.body.style.overflow = 'hidden';
// Focus the search input inside the overlay
const input = searchOverlay.querySelector('.psa-search-input, .ps-search-input, input[type="search"], input[type="text"]');
if (input) {
setTimeout(() => input.focus(), 100);
}
}
function closeSearchOverlay() {
if (!searchOverlay) return;
searchOverlay.classList.remove('active');
searchOverlay.setAttribute('aria-hidden', 'true');
document.body.style.overflow = '';
// Return focus to search toggle
if (searchToggle) searchToggle.focus();
}
if (searchToggle) {
searchToggle.addEventListener('click', openSearchOverlay);
}
if (searchOverlayClose) {
searchOverlayClose.addEventListener('click', closeSearchOverlay);
}
if (searchOverlay) {
// Close overlay when clicking the backdrop
searchOverlay.addEventListener('click', (e) => {
if (e.target === searchOverlay) {
closeSearchOverlay();
}
});
// Close on Escape key
document.addEventListener('keydown', (e) => {
if (e.key === 'Escape' && searchOverlay.classList.contains('active')) {
closeSearchOverlay();
}
});
}
})();

View File

@@ -1,82 +1,82 @@
<?php
/**
* The footer for Peptide Starter theme
*
* @package peptide-starter
*/
?>
</main><!-- #main -->
<footer class="site-footer">
<div class="footer-wrapper">
<!-- Newsletter Signup -->
<?php if ( peptide_starter_show_newsletter_form() ) { ?>
<div class="footer-newsletter">
<h3><?php esc_html_e( 'Stay Updated', 'peptide-starter' ); ?></h3>
<p><?php esc_html_e( 'Subscribe to our newsletter for the latest peptide research and updates.', 'peptide-starter' ); ?></p>
<form class="newsletter-form" action="<?php echo esc_url( admin_url( 'admin-post.php' ) ); ?>" method="post">
<?php wp_nonce_field( 'peptide_starter_newsletter', 'ps_newsletter_nonce' ); ?>
<input type="hidden" name="action" value="peptide_starter_newsletter_signup">
<input
type="email"
name="email"
class="newsletter-input"
placeholder="<?php esc_attr_e( 'your@email.com', 'peptide-starter' ); ?>"
required
>
<button type="submit" class="ps-btn ps-btn-primary">
<?php esc_html_e( 'Subscribe', 'peptide-starter' ); ?>
</button>
</form>
</div>
<?php } ?>
<!-- Footer Grid -->
<div class="footer-grid">
<!-- Footer Widget Areas -->
<?php
for ( $i = 1; $i <= 4; $i++ ) {
echo '<div class="footer-section">';
if ( is_active_sidebar( 'footer-' . $i ) ) {
dynamic_sidebar( 'footer-' . $i );
} else {
// Default footer content if no widgets
if ( 1 === $i ) {
echo '<h3>' . esc_html__( 'About', 'peptide-starter' ) . '</h3>';
echo '<p>' . esc_html__( 'Peptide Repo is a comprehensive scientific database for peptide research.', 'peptide-starter' ) . '</p>';
} elseif ( 2 === $i ) {
echo '<h3>' . esc_html__( 'Quick Links', 'peptide-starter' ) . '</h3>';
echo '<ul>';
echo '<li><a href="' . esc_url( home_url( '/' ) ) . '">' . esc_html__( 'Home', 'peptide-starter' ) . '</a></li>';
echo '<li><a href="' . esc_url( home_url( '/peptides' ) ) . '">' . esc_html__( 'Peptides Database', 'peptide-starter' ) . '</a></li>';
echo '</ul>';
} elseif ( 3 === $i ) {
echo '<h3>' . esc_html__( 'Resources', 'peptide-starter' ) . '</h3>';
echo '<ul>';
echo '<li><a href="#">' . esc_html__( 'Research', 'peptide-starter' ) . '</a></li>';
echo '<li><a href="#">' . esc_html__( 'Documentation', 'peptide-starter' ) . '</a></li>';
echo '</ul>';
} elseif ( 4 === $i ) {
echo '<h3>' . esc_html__( 'Connect', 'peptide-starter' ) . '</h3>';
echo '<ul>';
echo '<li><a href="https://github.com/peptiderepo" target="_blank" rel="noopener">' . esc_html__( 'GitHub', 'peptide-starter' ) . '</a></li>';
echo '<li><a href="#">' . esc_html__( 'Twitter', 'peptide-starter' ) . '</a></li>';
echo '</ul>';
}
}
echo '</div>';
}
?>
</div>
<!-- Footer Bottom -->
<div class="footer-bottom">
<p><?php echo wp_kses_post( peptide_starter_get_footer_copyright() ); ?></p>
</div>
</div>
</footer>
<?php wp_footer(); ?>
</body>
</html>
<?php
/**
* The footer for Peptide Starter theme
*
* @package peptide-starter
*/
?>
</main><!-- #main -->
<footer class="site-footer">
<div class="footer-wrapper">
<!-- Newsletter Signup -->
<?php if ( peptide_starter_show_newsletter_form() ) { ?>
<div class="footer-newsletter">
<h3><?php esc_html_e( 'Stay Updated', 'peptide-starter' ); ?></h3>
<p><?php esc_html_e( 'Subscribe to our newsletter for the latest peptide research and updates.', 'peptide-starter' ); ?></p>
<form class="newsletter-form" action="<?php echo esc_url( admin_url( 'admin-post.php' ) ); ?>" method="post">
<?php wp_nonce_field( 'peptide_starter_newsletter', 'ps_newsletter_nonce' ); ?>
<input type="hidden" name="action" value="peptide_starter_newsletter_signup">
<input
type="email"
name="email"
class="newsletter-input"
placeholder="<?php esc_attr_e( 'your@email.com', 'peptide-starter' ); ?>"
required
>
<button type="submit" class="ps-btn ps-btn-primary">
<?php esc_html_e( 'Subscribe', 'peptide-starter' ); ?>
</button>
</form>
</div>
<?php } ?>
<!-- Footer Grid -->
<div class="footer-grid">
<!-- Footer Widget Areas -->
<?php
for ( $i = 1; $i <= 4; $i++ ) {
echo '<div class="footer-section">';
if ( is_active_sidebar( 'footer-' . $i ) ) {
dynamic_sidebar( 'footer-' . $i );
} else {
// Default footer content if no widgets
if ( 1 === $i ) {
echo '<h3>' . esc_html__( 'About', 'peptide-starter' ) . '</h3>';
echo '<p>' . esc_html__( 'Peptide Repo is a comprehensive scientific database for peptide research.', 'peptide-starter' ) . '</p>';
} elseif ( 2 === $i ) {
echo '<h3>' . esc_html__( 'Quick Links', 'peptide-starter' ) . '</h3>';
echo '<ul>';
echo '<li><a href="' . esc_url( home_url( '/' ) ) . '">' . esc_html__( 'Home', 'peptide-starter' ) . '</a></li>';
echo '<li><a href="' . esc_url( home_url( '/peptides' ) ) . '">' . esc_html__( 'Peptides Database', 'peptide-starter' ) . '</a></li>';
echo '</ul>';
} elseif ( 3 === $i ) {
echo '<h3>' . esc_html__( 'Resources', 'peptide-starter' ) . '</h3>';
echo '<ul>';
echo '<li><a href="#">' . esc_html__( 'Research', 'peptide-starter' ) . '</a></li>';
echo '<li><a href="#">' . esc_html__( 'Documentation', 'peptide-starter' ) . '</a></li>';
echo '</ul>';
} elseif ( 4 === $i ) {
echo '<h3>' . esc_html__( 'Connect', 'peptide-starter' ) . '</h3>';
echo '<ul>';
echo '<li><a href="https://github.com/peptiderepo" target="_blank" rel="noopener">' . esc_html__( 'GitHub', 'peptide-starter' ) . '</a></li>';
echo '<li><a href="#">' . esc_html__( 'Twitter', 'peptide-starter' ) . '</a></li>';
echo '</ul>';
}
}
echo '</div>';
}
?>
</div>
<!-- Footer Bottom -->
<div class="footer-bottom">
<p><?php echo wp_kses_post( peptide_starter_get_footer_copyright() ); ?></p>
</div>
</div>
</footer>
<?php wp_footer(); ?>
</body>
</html>

View File

@@ -1,85 +1,85 @@
<?php
/**
* The front page template
*
* @package peptide-starter
*/
get_header();
?>
<main id="main" class="site-main">
<!-- Hero Section -->
<section class="hero-section">
<div class="hero-content">
<h1 class="hero-title"><?php echo esc_html( peptide_starter_get_hero_title() ); ?></h1>
<p class="hero-subtitle"><?php echo esc_html( peptide_starter_get_hero_subtitle() ); ?></p>
<!-- Hero Search (Peptide Search AI) -->
<div class="hero-search">
<?php
if ( shortcode_exists( 'peptide_search' ) ) {
echo do_shortcode( '[peptide_search placeholder="' . esc_attr( peptide_starter_get_search_placeholder() ) . '"]' );
} else {
?>
<form class="ps-search-form" method="get" action="<?php echo esc_url( home_url( '/' ) ); ?>">
<input
type="search"
name="s"
class="ps-search-input"
placeholder="<?php echo esc_attr( peptide_starter_get_search_placeholder() ); ?>"
value="<?php echo esc_attr( get_search_query() ); ?>"
>
</form>
<?php
}
?>
</div>
<!-- Hero CTAs -->
<div class="hero-ctas">
<a href="<?php echo esc_url( home_url( '/peptides' ) ); ?>" class="ps-btn ps-btn-primary">
<?php esc_html_e( 'Browse Peptides', 'peptide-starter' ); ?>
</a>
<a href="<?php echo esc_url( home_url( '/about' ) ); ?>" class="ps-btn ps-btn-secondary">
<?php esc_html_e( 'Learn More', 'peptide-starter' ); ?>
</a>
</div>
</div>
</section>
<!-- PRAutoBlogger Posts Widget -->
<?php
if ( shortcode_exists( 'prautoblogger_posts' ) ) {
echo do_shortcode( '[prautoblogger_posts count="6" title="' . esc_attr__( 'Latest Research & Insights', 'peptide-starter' ) . '" subtitle="' . esc_attr__( 'Evidence-based articles on peptides, protocols, and emerging research', 'peptide-starter' ) . '"]' );
}
?>
<!-- News Feed Section -->
<?php
// Display the Peptide News plugin shortcode if available
if ( shortcode_exists( 'peptide_news' ) ) {
?>
<section class="news-feed-section">
<div class="ps-container">
<div class="news-feed-header">
<h2 class="news-feed-title"><?php esc_html_e( 'Latest Peptide Research', 'peptide-starter' ); ?></h2>
<p class="news-feed-description">
<?php esc_html_e( 'Stay updated with the latest developments in peptide science and research.', 'peptide-starter' ); ?>
</p>
</div>
<?php echo do_shortcode( '[peptide_news]' ); ?>
</div>
</section>
<?php
}
?>
<?php
// Note: The front page layout is handled entirely by this template.
// Old page content (e.g. from Elementor) is intentionally NOT rendered here
// to avoid duplicate hero sections and empty space.
?>
</main>
<?php get_footer(); ?>
<?php
/**
* The front page template
*
* @package peptide-starter
*/
get_header();
?>
<main id="main" class="site-main">
<!-- Hero Section -->
<section class="hero-section">
<div class="hero-content">
<h1 class="hero-title"><?php echo esc_html( peptide_starter_get_hero_title() ); ?></h1>
<p class="hero-subtitle"><?php echo esc_html( peptide_starter_get_hero_subtitle() ); ?></p>
<!-- Hero Search (Peptide Search AI) -->
<div class="hero-search">
<?php
if ( shortcode_exists( 'peptide_search' ) ) {
echo do_shortcode( '[peptide_search placeholder="' . esc_attr( peptide_starter_get_search_placeholder() ) . '"]' );
} else {
?>
<form class="ps-search-form" method="get" action="<?php echo esc_url( home_url( '/' ) ); ?>">
<input
type="search"
name="s"
class="ps-search-input"
placeholder="<?php echo esc_attr( peptide_starter_get_search_placeholder() ); ?>"
value="<?php echo esc_attr( get_search_query() ); ?>"
>
</form>
<?php
}
?>
</div>
<!-- Hero CTAs -->
<div class="hero-ctas">
<a href="<?php echo esc_url( home_url( '/peptides' ) ); ?>" class="ps-btn ps-btn-primary">
<?php esc_html_e( 'Browse Peptides', 'peptide-starter' ); ?>
</a>
<a href="<?php echo esc_url( home_url( '/about' ) ); ?>" class="ps-btn ps-btn-secondary">
<?php esc_html_e( 'Learn More', 'peptide-starter' ); ?>
</a>
</div>
</div>
</section>
<!-- PRAutoBlogger Posts Widget -->
<?php
if ( shortcode_exists( 'prautoblogger_posts' ) ) {
echo do_shortcode( '[prautoblogger_posts count="6" title="' . esc_attr__( 'Latest Research & Insights', 'peptide-starter' ) . '" subtitle="' . esc_attr__( 'Evidence-based articles on peptides, protocols, and emerging research', 'peptide-starter' ) . '"]' );
}
?>
<!-- News Feed Section -->
<?php
// Display the Peptide News plugin shortcode if available
if ( shortcode_exists( 'peptide_news' ) ) {
?>
<section class="news-feed-section">
<div class="ps-container">
<div class="news-feed-header">
<h2 class="news-feed-title"><?php esc_html_e( 'Latest Peptide Research', 'peptide-starter' ); ?></h2>
<p class="news-feed-description">
<?php esc_html_e( 'Stay updated with the latest developments in peptide science and research.', 'peptide-starter' ); ?>
</p>
</div>
<?php echo do_shortcode( '[peptide_news]' ); ?>
</div>
</section>
<?php
}
?>
<?php
// Note: The front page layout is handled entirely by this template.
// Old page content (e.g. from Elementor) is intentionally NOT rendered here
// to avoid duplicate hero sections and empty space.
?>
</main>
<?php get_footer(); ?>

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View File

@@ -29,14 +29,16 @@
<!-- Primary Navigation -->
<nav class="primary-navigation">
<?php
wp_nav_menu( array(
'theme_location' => 'primary',
'fallback_cb' => 'peptide_starter_primary_menu_fallback',
'walker' => new Peptide_Starter_Nav_Walker(),
'depth' => 2,
'container' => false,
'items_wrap' => '<ul>%3$s</ul>',
) );
wp_nav_menu(
array(
'theme_location' => 'primary',
'fallback_cb' => 'peptide_starter_primary_menu_fallback',
'walker' => new Peptide_Starter_Nav_Walker(),
'depth' => 2,
'container' => false,
'items_wrap' => '<ul>%3$s</ul>',
)
);
?>
</nav>

View File

@@ -1,27 +1,27 @@
<?php
/**
* The search form template
*
* @package peptide-starter
*/
?>
<form role="search" method="get" class="ps-search-form" action="<?php echo esc_url( home_url( '/' ) ); ?>">
<label for="search" class="sr-only"><?php esc_html_e( 'Search', 'peptide-starter' ); ?></label>
<div style="position: relative;">
<input
type="search"
id="search"
name="s"
class="ps-search-input"
placeholder="<?php esc_attr_e( 'Search...', 'peptide-starter' ); ?>"
value="<?php echo esc_attr( get_search_query() ); ?>"
>
<button type="submit" class="ps-btn ps-btn-primary" style="position: absolute; right: 0; top: 0; border-radius: 0 var(--radius-lg) var(--radius-lg) 0;">
<svg width="20" height="20" viewBox="0 0 20 20" fill="currentColor" xmlns="http://www.w3.org/2000/svg">
<path d="M9 17C13.4183 17 17 13.4183 17 9C17 4.58172 13.4183 1 9 1C4.58172 1 1 4.58172 1 9C1 13.4183 4.58172 17 9 17Z" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/>
<path d="M19 19L14.65 14.65" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/>
</svg>
</button>
</div>
</form>
<?php
/**
* The search form template
*
* @package peptide-starter
*/
?>
<form role="search" method="get" class="ps-search-form" action="<?php echo esc_url( home_url( '/' ) ); ?>">
<label for="search" class="sr-only"><?php esc_html_e( 'Search', 'peptide-starter' ); ?></label>
<div style="position: relative;">
<input
type="search"
id="search"
name="s"
class="ps-search-input"
placeholder="<?php esc_attr_e( 'Search...', 'peptide-starter' ); ?>"
value="<?php echo esc_attr( get_search_query() ); ?>"
>
<button type="submit" class="ps-btn ps-btn-primary" style="position: absolute; right: 0; top: 0; border-radius: 0 var(--radius-lg) var(--radius-lg) 0;">
<svg width="20" height="20" viewBox="0 0 20 20" fill="currentColor" xmlns="http://www.w3.org/2000/svg">
<path d="M9 17C13.4183 17 17 13.4183 17 9C17 4.58172 13.4183 1 9 1C4.58172 1 1 4.58172 1 9C1 13.4183 4.58172 17 9 17Z" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/>
<path d="M19 19L14.65 14.65" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/>
</svg>
</button>
</div>
</form>

View File

@@ -39,25 +39,45 @@ get_header();
<!-- Meta Information -->
<div class="peptide-meta" style="margin-top: var(--spacing-3xl); padding-top: var(--spacing-2xl); border-top: 1px solid var(--color-border-default);">
<dl>
<?php if ( $formula = get_post_meta( get_the_ID(), 'peptide_formula', true ) ) { ?>
<?php
$formula = get_post_meta( get_the_ID(), 'peptide_formula', true );
if ( $formula ) {
?>
<dt><strong><?php esc_html_e( 'Molecular Formula:', 'peptide-starter' ); ?></strong></dt>
<dd><code><?php echo esc_html( $formula ); ?></code></dd>
<?php } ?>
<?php
}
?>
<?php if ( $sequence = get_post_meta( get_the_ID(), 'peptide_sequence', true ) ) { ?>
<?php
$sequence = get_post_meta( get_the_ID(), 'peptide_sequence', true );
if ( $sequence ) {
?>
<dt><strong><?php esc_html_e( 'Sequence:', 'peptide-starter' ); ?></strong></dt>
<dd><code><?php echo esc_html( $sequence ); ?></code></dd>
<?php } ?>
<?php
}
?>
<?php if ( $molecular_weight = get_post_meta( get_the_ID(), 'peptide_molecular_weight', true ) ) { ?>
<?php
$molecular_weight = get_post_meta( get_the_ID(), 'peptide_molecular_weight', true );
if ( $molecular_weight ) {
?>
<dt><strong><?php esc_html_e( 'Molecular Weight:', 'peptide-starter' ); ?></strong></dt>
<dd><?php echo esc_html( $molecular_weight ); ?> Da</dd>
<?php } ?>
<?php
}
?>
<?php if ( $therapeutic_use = get_post_meta( get_the_ID(), 'peptide_therapeutic_use', true ) ) { ?>
<?php
$therapeutic_use = get_post_meta( get_the_ID(), 'peptide_therapeutic_use', true );
if ( $therapeutic_use ) {
?>
<dt><strong><?php esc_html_e( 'Therapeutic Use:', 'peptide-starter' ); ?></strong></dt>
<dd><?php echo esc_html( $therapeutic_use ); ?></dd>
<?php } ?>
<?php
}
?>
</dl>
</div>

View File

@@ -15,7 +15,7 @@
<?php
if ( is_search() ) {
?>
<p><?php esc_html_e( "Sorry, but nothing matched your search terms. Please try again with some different keywords.", 'peptide-starter' ); ?></p>
<p><?php esc_html_e( 'Sorry, but nothing matched your search terms. Please try again with some different keywords.', 'peptide-starter' ); ?></p>
<?php
get_search_form();
} elseif ( is_home() && current_user_can( 'publish_posts' ) ) {
@@ -38,11 +38,11 @@
<?php
} elseif ( is_archive() ) {
?>
<p><?php esc_html_e( "It looks like there are no posts for this archive. Try a different category or date.", 'peptide-starter' ); ?></p>
<p><?php esc_html_e( 'It looks like there are no posts for this archive. Try a different category or date.', 'peptide-starter' ); ?></p>
<?php
} else {
?>
<p><?php esc_html_e( "It seems we can't find what you're looking for. Perhaps searching can help.", 'peptide-starter' ); ?></p>
<p><?php esc_html_e( 'It seems we can\'t find what you\'re looking for. Perhaps searching can help.', 'peptide-starter' ); ?></p>
<?php
get_search_form();
}