front-page.php:
- Replace 3 decorative multi-line HTML comment blocks (tab+space mixed
indentation) with single-line <!-- SECTION --> comments; eliminates 16
'Tabs must be used' PHPCS errors at lines 37-41, 93-97, 127-132
inc/verdict-meta.php:
- Line 37: correct over-indented 'single' key (6 tabs → 3 tabs to match
array alignment of sibling keys)
- Line 171: split '<?php for (...)' onto two lines so opening PHP tag is
on a line by itself (WordPress PHPCS requirement)
Both are pre-existing violations now exposed because CI runs PHPCS on all
PHP files (not just changed ones). No functional change.
Major theme extension adding full-featured navigation with dropdown submenus (Tools, My Data, Resources),
9 new page templates (Calculator, Protocol Builder, Tracker, Subject Log, Documentation, Directory,
Science Feed, Profile, Sign In/Register), documentation page with sidebar ToC and scroll spy,
branded AJAX authentication forms, newsletter signup with admin export, slide-out contact/support panel,
Research Modules 6-card grid on front page, and comprehensive footer update.
Split functions.php (554→206 lines) into 6 focused inc/ modules: helpers, customizer, auth-handlers,
contact-handler, page-setup, newsletter-admin. All new components include dark mode support, CSRF
protection, input sanitization, output escaping, and graceful plugin degradation via shortcode_exists().
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Warm off-white light palette, decorative geometric shapes,
category-coded peptide cards with tinted borders and pill badges,
larger hero typography with accent word, header CTA button,
and redesigned single-peptide detail page with meta card grid.
Dark mode stays default per user preference. Light mode gets the
warm treatment when toggled or via prefers-color-scheme.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Convert all PHP files from CRLF to LF line endings
- Reformat multi-line function calls per WPCS standard
(opening paren last on line, closing paren on own line)
- Fix assignment-in-conditional in single-peptide.php
- Change double quotes to single quotes in content-none.php
- Exclude InvalidClassFileName sniff (standard WP functions.php pattern)
- Fix archive-peptide.php opening PHP tag placement
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Wrapped get_search_query() with esc_attr() in 404.php, front-page.php,
and searchform.php. Without this, a crafted search query can inject
arbitrary HTML attributes into the search input value field.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Renders PRAutoBlogger-generated research articles as a card grid
between the hero section and the peptide news feed. Wrapped in
shortcode_exists() so it degrades gracefully if the plugin is
deactivated.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
